genomes

Data license: ODbL · Data source: Larue & Roy, 2023

taxonomy_id
INTEGER (primary key), unique identifier for each species
species
TEXT, binomial name of the species
family
TEXT, taxonomic family of the species
order
TEXT, taxonomic order of the species
phylum
TEXT, taxonomic phylum of the species
accession
TEXT, accession number of the genome assembly
n_minor_introns
INTEGER, total number of minor introns in the genome
n_major_introns
INTEGER, total number of major introns in the genome
percent_minor_introns
REAL, percentage of minor introns in the genome
busco_score
REAL, BUSCO score assessing the genome assembly completeness (vs. eukaryota_odb10)
minor_snRNAs
TEXT, minor snRNAs found in the annotated transcriptome
genome_version
TEXT, version of the genome assembly
source_url
TEXT, URL for the source genome/annotation files
source_metadata
TEXT, additional metadata from the original data source
minor_intron+
INTEGER, indicates if the species is inferred to contain real minor introns (1) or not (0)

285 rows where phylum = "Streptophyta" sorted by percent_minor_introns descending

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Suggested facets: minor_snRNAs, minor_snRNAs (array)

taxonomy_id species family order phylum accession n_minor_introns n_major_introns percent_minor_introns ▲ busco_score minor_snRNAs genome_version source_url source_metadata minor_intron+
3197 Marchantia polymorpha Marchantiaceae Marchantiales Streptophyta Mpolymorpha_v3_1 260 79935 0.3242097387617682 99.6 ["u11", "u12", "u6atac"] .   . 1
51953 Elaeis guineensis Arecaceae Arecales Streptophyta GCF_000442705.1 383 134723 0.2834811185291549 98.8 ["u11", "u12", "u6atac"] EG5 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/442/705/GCF_000442705.1_EG5 GCF_000442705.1;PRJNA268357;SAMN02981535;ASJS00000000.1;representative genome;51953;51953;Elaeis guineensis;;;latest;Chromosome;Major;Full;2013/08/13;EG5;Orion Genomics;GCA_000442705.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/442/705/GCF_000442705.1_EG5;;;na 1
3649 Carica papaya Caricaceae Brassicales Streptophyta GCF_000150535.2 243 86587 0.2798571922146723 83.5 ["u11", "u12", "u6atac"] Papaya1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/150/535/GCF_000150535.2_Papaya1.0 GCF_000150535.2;PRJNA264084;SAMN02953710;ABIM00000000.1;representative genome;3649;3649;Carica papaya;cultivar=SunUp;;latest;Scaffold;Minor;Full;2008/05/06;Papaya1.0;The Papaya Genome Sequencing Consortium;GCA_000150535.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/150/535/GCF_000150535.2_Papaya1.0;;;na 1
3871 Lupinus angustifolius Fabaceae Fabales Streptophyta GCF_001865875.1 474 172856 0.2734667974384123 100.0 ["u11", "u12", "u6atac"] LupAngTanjil_v1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/865/875/GCF_001865875.1_LupAngTanjil_v1.0 GCF_001865875.1;PRJNA356456;SAMN04215042;MLAU00000000.1;representative genome;3871;3871;Lupinus angustifolius;cultivar=Tanjil;;latest;Chromosome;Major;Full;2016/11/16;LupAngTanjil_v1.0;CSIRO;GCA_001865875.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/865/875/GCF_001865875.1_LupAngTanjil_v1.0;;;na 1
4615 Ananas comosus Bromeliaceae Poales Streptophyta GCF_001540865.1 318 116536 0.2721344583839663 97.6 ["u11", "u12", "u6atac"] ASM154086v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/540/865/GCF_001540865.1_ASM154086v1 GCF_001540865.1;PRJNA371634;SAMN04316497;LODP00000000.1;representative genome;4615;4615;Ananas comosus;cultivar=F153;;latest;Chromosome;Major;Full;2016/03/14;ASM154086v1;Fujian Agriculture and Forestry University;GCA_001540865.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/540/865/GCF_001540865.1_ASM154086v1;;;na 1
13333 Amborella trichopoda Amborellaceae Amborellales Streptophyta GCF_000471905.2 253 92821 0.2718267185250446 99.2 ["u11", "u12", "u6atac"] AMTR1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/471/905/GCF_000471905.2_AMTR1.0 GCF_000471905.2;PRJNA238126;SAMN02313977;AWHE00000000.1;representative genome;13333;13333;Amborella trichopoda;;;latest;Scaffold;Minor;Full;2013/09/30;AMTR1.0;Amborella Genome Sequencing Project;GCA_000471905.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/471/905/GCF_000471905.2_AMTR1.0;;;na 1
38723 Joinvillea ascendens Joinvilleaceae Poales Streptophyta Jascendens_v1_1 299 109834 0.2714899258169668 100.0 ["u11", "u12", "u6atac"] .   . 1
78828 Phalaenopsis equestris Orchidaceae Asparagales Streptophyta GCF_001263595.1 261 96206 0.2705588439570008 94.9 ["u11", "u12", "u6atac"] ASM126359v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/263/595/GCF_001263595.1_ASM126359v1 GCF_001263595.1;PRJNA382149;SAMN02046388;APLD00000000.1;representative genome;78828;78828;Phalaenopsis equestris;;;latest;Scaffold;Major;Full;2015/08/07;ASM126359v1;BGI-SZ;GCA_001263595.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/263/595/GCF_001263595.1_ASM126359v1;;;na 1
108875 Herrania umbratica Malvaceae Malvales Streptophyta GCF_002168275.1 268 98789 0.270551298747186 96.1 ["u11", "u12", "u6atac"] ASM216827v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/168/275/GCF_002168275.1_ASM216827v2 GCF_002168275.1;PRJNA389730;SAMN06806157;NHTG00000000.1;representative genome;108875;108875;Herrania umbratica;cultivar=Fairchild;;latest;Scaffold;Major;Full;2017/06/05;ASM216827v2;Mars, Incorporated;GCA_002168275.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/168/275/GCF_002168275.1_ASM216827v2;;;na 1
4432 Nelumbo nucifera Nelumbonaceae Proteales Streptophyta GCF_000365185.1 334 123143 0.2704957198506604 99.2 ["u11", "u12", "u6atac"] Chinese Lotus 1.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/365/185/GCF_000365185.1_Chinese_Lotus_1.1 GCF_000365185.1;PRJNA264089;SAMN02054413;AQOG00000000.1;representative genome;4432;4432;Nelumbo nucifera;;;latest;Scaffold;Major;Full;2013/08/08;Chinese Lotus 1.1;University of Illinois at Urbana-Champaign;GCA_000365185.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/365/185/GCF_000365185.1_Chinese_Lotus_1.1;;;na 1
4155 Erythranthe guttata Phrymaceae Lamiales Streptophyta GCF_000504015.1 325 120866 0.2681717289237649 98.8 ["u11", "u6atac"] Mimgu1_0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/504/015/GCF_000504015.1_Mimgu1_0 GCF_000504015.1;PRJNA285087;SAMN02742818;APLE00000000.1;representative genome;4155;4155;Erythranthe guttata;cultivar=IM62;;latest;Scaffold;Major;Full;2014/04/02;Mimgu1_0;DOE Joint Genome Institute;GCA_000504015.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/504/015/GCF_000504015.1_Mimgu1_0;;;na 1
3656 Cucumis melo Cucurbitaceae Cucurbitales Streptophyta GCF_000313045.1 273 101631 0.2678991992463495 98.8 ["u11", "u12", "u6atac"] ASM31304v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/313/045/GCF_000313045.1_ASM31304v1 GCF_000313045.1;PRJNA246165;SAMEA2272451;CAJI00000000.1;representative genome;3656;3656;Cucumis melo;cultivar=DHL92;;latest;Scaffold;Major;Full;2012/10/05;ASM31304v1;Genetica Molecular, Centre de Recerca en Agrigenomica (CRAG);GCA_000313045.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/313/045/GCF_000313045.1_ASM31304v1;;;na 1
54955 Telopea speciosissima Proteaceae Proteales Streptophyta GCF_018873765.1 369 137446 0.2677502448935167 98.8 ["u11", "u12", "u6atac"] Tspe_v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/873/765/GCF_018873765.1_Tspe_v1 GCF_018873765.1;PRJNA765358;SAMN18238110;JAGEPE000000000.1;representative genome;54955;54955;Telopea speciosissima;ecotype=Mountain lineage;NSW1024214;latest;Chromosome;Major;Full;2021/06/14;Tspe_v1;Genomics for Australian Plants;GCA_018873765.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/873/765/GCF_018873765.1_Tspe_v1;;;na 1
3827 Cicer arietinum Fabaceae Fabales Streptophyta GCF_000331145.1 334 124586 0.2673711175152097 100.0 ["u11", "u12", "u6atac"] ASM33114v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/331/145/GCF_000331145.1_ASM33114v1 GCF_000331145.1;PRJNA190909;SAMN02981489;ANPC00000000.1;representative genome;3827;3827;Cicer arietinum;cultivar=CDC Frontier;;latest;Chromosome;Major;Full;2013/01/16;ASM33114v1;BGI-Shenzhen;GCA_000331145.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/331/145/GCF_000331145.1_ASM33114v1;;;na 1
4641 Musa acuminata Musaceae Zingiberales Streptophyta GCF_000313855.2 400 149428 0.2669727954721413 99.6 ["u11", "u12", "u4atac", "u6atac"] ASM31385v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/313/855/GCF_000313855.2_ASM31385v2 GCF_000313855.2;PRJNA262552;SAMEA2272344;CAIC00000000.1;representative genome;214687;4641;Musa acuminata subsp. malaccensis;strain=Doubled-haploid Pahang (DH-Pahang);;latest;Chromosome;Minor;Full;2012/11/14;ASM31385v2;Genoscope/IG/CEA;GCA_000313855.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/313/855/GCF_000313855.2_ASM31385v2;;;na 1
42345 Phoenix dactylifera Arecaceae Arecales Streptophyta GCF_009389715.1 403 150749 0.266619032497089 98.4 ["u11", "u12", "u6atac"] palm_55x_up_171113_PBpolish2nd_filt_p https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/389/715/GCF_009389715.1_palm_55x_up_171113_PBpolish2nd_filt_p GCF_009389715.1;PRJNA692501;SAMN05011615;NBZB00000000.1;representative genome;42345;42345;Phoenix dactylifera;cultivar=Barhee BC4;;latest;Chromosome;Major;Full;2019/11/04;palm_55x_up_171113_PBpolish2nd_filt_p;The University of Arizona;GCA_009389715.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/389/715/GCF_009389715.1_palm_55x_up_171113_PBpolish2nd_filt_p;;;na 1
3760 Prunus persica Rosaceae Rosales Streptophyta GCF_000346465.2 303 113528 0.2661840799079337 100.0 ["u11", "u12", "u6atac"] Prunus_persica_NCBIv2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/346/465/GCF_000346465.2_Prunus_persica_NCBIv2 GCF_000346465.2;PRJNA241430;SAMN02981429;AKXU00000000.2;representative genome;3760;3760;Prunus persica;cultivar=Lovell;;latest;Chromosome;Major;Full;2017/02/02;Prunus_persica_NCBIv2;PGF;GCA_000346465.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/346/465/GCF_000346465.2_Prunus_persica_NCBIv2;;;na 1
4533 Oryza brachyantha Poaceae Poales Streptophyta GCF_000231095.2 310 116531 0.2653178250785255 100.0 ["u11", "u12", "u6atac"] ObraRS2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/231/095/GCF_000231095.2_ObraRS2 GCF_000231095.2;PRJNA232125;SAMN02981362;AGAT00000000.2;representative genome;4533;4533;Oryza brachyantha;;;latest;Chromosome;Major;Full;2021/03/10;ObraRS2;The Institute of Genetics and Developmental Biology;GCA_000231095.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/231/095/GCF_000231095.2_ObraRS2;;;na 1
3775 Cephalotus follicularis Cephalotaceae Oxalidales Streptophyta GCA_001972305.1 244 91724 0.2653096729297147 98.0 ["u11", "u12", "u6atac"] Cfol_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/972/305/GCA_001972305.1_Cfol_1.0 GCA_001972305.1;PRJDB4484;SAMD00045316;BDDD00000000.1;representative genome;3775;3775;Cephalotus follicularis;;St1;latest;Scaffold;Major;Full;2017/01/11;Cfol_1.0;National Institute for Basic Biology;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/972/305/GCA_001972305.1_Cfol_1.0;;;na 1
102107 Prunus mume Rosaceae Rosales Streptophyta GCF_000346735.1 302 113619 0.2650959875703338 99.2 ["u11", "u12", "u4atac", "u6atac"] P.mume_V1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/346/735/GCF_000346735.1_P.mume_V1.0 GCF_000346735.1;PRJNA246160;SAMN02981503;AOHF00000000.1;representative genome;102107;102107;Prunus mume;;4;latest;Chromosome;Major;Full;2014/02/28;P.mume_V1.0;BGI;GCA_000346735.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/346/735/GCF_000346735.1_P.mume_V1.0;;;na 1
906689 Dendrobium catenatum Orchidaceae Asparagales Streptophyta GCF_001605985.2 270 101798 0.2645295293333856 96.9 ["u11", "u12", "u6atac"] ASM160598v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/605/985/GCF_001605985.2_ASM160598v2 GCF_001605985.2;PRJNA453230;SAMN03083363;JSDN00000000.2;representative genome;906689;906689;Dendrobium catenatum;;;latest;Scaffold;Major;Full;2017/12/12;ASM160598v2;The National Orchid Conservation Center of China, and The Orchid Conservation and Research Center of Shenzhen;GCA_001605985.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/605/985/GCF_001605985.2_ASM160598v2;;;na 1
981085 Morus notabilis Moraceae Rosales Streptophyta GCF_000414095.1 281 106075 0.2642070028959344 99.2 ["u11", "u12", "u6atac"] ASM41409v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/414/095/GCF_000414095.1_ASM41409v2 GCF_000414095.1;PRJNA263939;SAMN02141246;ATGF00000000.1;representative genome;981085;981085;Morus notabilis;;;latest;Scaffold;Major;Full;2013/08/07;ASM41409v2;BGI;GCA_000414095.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/414/095/GCF_000414095.1_ASM41409v2;;;na 1
4182 Sesamum indicum Pedaliaceae Lamiales Streptophyta GCF_000512975.1 318 120050 0.2641898178917984 98.8 ["u11", "u12", "u6atac"] S_indicum_v1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/512/975/GCF_000512975.1_S_indicum_v1.0 GCF_000512975.1;PRJNA268358;SAMN02981519;APMJ00000000.1;representative genome;4182;4182;Sesamum indicum;cultivar=Zhongzhi No. 13;;latest;Chromosome;Major;Full;2014/01/06;S_indicum_v1.0;Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences;GCA_000512975.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/512/975/GCF_000512975.1_S_indicum_v1.0;;;na 1
3661 Cucurbita maxima Cucurbitaceae Cucurbitales Streptophyta GCF_002738345.1 384 145634 0.2629812762810065 99.6 ["u11", "u12", "u6atac"] Cmax_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/738/345/GCF_002738345.1_Cmax_1.0 GCF_002738345.1;PRJNA418295;SAMN06886671;NEWN00000000.1;representative genome;3661;3661;Cucurbita maxima;cultivar=Rimu;;latest;Scaffold;Major;Full;2017/10/31;Cmax_1.0;Cornell University;GCA_002738345.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/738/345/GCF_002738345.1_Cmax_1.0;;;na 1
3673 Momordica charantia Cucurbitaceae Cucurbitales Streptophyta GCF_001995035.1 264 100445 0.2621414173509815 97.6 ["u11", "u12", "u6atac"] ASM199503v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/995/035/GCF_001995035.1_ASM199503v1 GCF_001995035.1;PRJNA397875;SAMD00048603;BDCS00000000.1;representative genome;3673;3673;Momordica charantia;strain=OHB3-1;;latest;Scaffold;Major;Full;2016/12/26;ASM199503v1;Division of Gene Research, Research Center for Human and Environmental Science, Shinshu University;GCA_001995035.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/995/035/GCF_001995035.1_ASM199503v1;;;na 1
3988 Ricinus communis Euphorbiaceae Malpighiales Streptophyta GCF_000151685.1 263 100369 0.2613482788774942 97.3 ["u11", "u12", "u6atac"] JCVI_RCG_1.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/151/685/GCF_000151685.1_JCVI_RCG_1.1 GCF_000151685.1;PRJNA34677;SAMN02953659;AASG00000000.2;representative genome;3988;3988;Ricinus communis;cultivar=Hale;;latest;Scaffold;Major;Full;2011/07/07;JCVI_RCG_1.1;J. Craig Venter Institute;GCA_000151685.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/151/685/GCF_000151685.1_JCVI_RCG_1.1;;;na 1
3662 Cucurbita moschata Cucurbitaceae Cucurbitales Streptophyta GCF_002738365.1 382 146075 0.2608274100930648 99.6 ["u11", "u12", "u6atac"] Cmos_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/738/365/GCF_002738365.1_Cmos_1.0 GCF_002738365.1;PRJNA418582;SAMN06886672;NEWM00000000.1;representative genome;3662;3662;Cucurbita moschata;cultivar=Rifu;;latest;Scaffold;Major;Full;2017/10/31;Cmos_1.0;Cornell University;GCA_002738365.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/738/365/GCF_002738365.1_Cmos_1.0;;;na 1
128215 Sphagnum magellanicum Sphagnaceae Sphagnales Streptophyta Smagellanicum_v1_1 334 127979 0.2603009827531115 99.6 ["u11", "u12", "u6atac"] .   . 1
3755 Prunus dulcis Rosaceae Rosales Streptophyta GCF_902201215.1 297 113926 0.2600176847044816 99.2 ["u11", "u12", "u4atac", "u6atac"] ALMONDv2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/201/215/GCF_902201215.1_ALMONDv2 GCF_902201215.1;PRJNA631757;SAMEA5704668;CABIKO000000000.1;representative genome;3755;3755;Prunus dulcis;;;latest;Chromosome;Major;Full;2019/10/10;ALMONDv2;CNAG;GCA_902201215.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/201/215/GCF_902201215.1_ALMONDv2;;;na 1
744485 Urochloa fusca Poaceae Poales Streptophyta Ufusca_v1_1 324 124504 0.2595571506392796 96.9 ["u11", "u12", "u6atac"] .   . 1
3316 Thuja plicata Cupressaceae Cupressales Streptophyta Tplicata_v3_1 315 121219 0.2591867296394424 95.3 ["u11", "u12", "u6atac"] .   . 1
87088 Vigna umbellata Fabaceae Fabales Streptophyta GCF_018835915.1 317 121990 0.2591838570155428 89.0 ["u11", "u12", "u4atac", "u6atac"] ASM1883591v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/835/915/GCF_018835915.1_ASM1883591v1 GCF_018835915.1;PRJNA819033;SAMN11230903;SPEB00000000.1;representative genome;87088;87088;Vigna umbellata;cultivar=VRB-3 Himshakti;;latest;Scaffold;Major;Full;2021/06/10;ASM1883591v1;ICGEB;GCA_018835915.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/835/915/GCF_018835915.1_ASM1883591v1;;;na 1
180498 Jatropha curcas Euphorbiaceae Malpighiales Streptophyta GCF_014843425.1 255 98296 0.2587492770240789 93.3 ["u11", "u12", "u6atac"] RJC1_Hi-C https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/843/425/GCF_014843425.1_RJC1_Hi-C GCF_014843425.1;PRJNA673911;SAMN15963826;JACVEQ000000000.1;representative genome;180498;180498;Jatropha curcas;;ELGS0001-1231;latest;Scaffold;Major;Full;2020/10/05;RJC1_Hi-C;Reliance Industries Ltd.;GCA_014843425.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/843/425/GCF_014843425.1_RJC1_Hi-C;;;na 1
42229 Prunus avium Rosaceae Rosales Streptophyta GCF_002207925.1 315 121620 0.2583343584696764 98.4 ["u11", "u12", "u4atac", "u6atac"] PAV_r1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/207/925/GCF_002207925.1_PAV_r1.0 GCF_002207925.1;PRJNA395588;SAMD00052827;BDGV00000000.1;representative genome;42229;42229;Prunus avium;cultivar=Satonishiki;;latest;Scaffold;Major;Full;2017/06/12;PAV_r1.0;Kazusa DNA Research Institute;GCA_002207925.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/207/925/GCF_002207925.1_PAV_r1.0;;;na 1
3663 Cucurbita pepo Cucurbitaceae Cucurbitales Streptophyta GCF_002806865.1 385 149056 0.2576267557096111 99.2 ["u11", "u12", "u6atac"] ASM280686v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/806/865/GCF_002806865.1_ASM280686v2 GCF_002806865.1;PRJNA421955;SAMN07125871;NHTM00000000.1;representative genome;3664;3663;Cucurbita pepo subsp. pepo;cultivar=mu-cu-16;;latest;Chromosome;Major;Full;2017/12/07;ASM280686v2;Comav-UPV;GCA_002806865.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/806/865/GCF_002806865.1_ASM280686v2;;;na 1
389490 Cleome violacea Cleomaceae Brassicales Streptophyta Cviolacea_585 266 103017 0.2575448040819883 99.6 ["u11", "u12", "u6atac"] .   . 1
206008 Panicum hallii Poaceae Poales Streptophyta GCF_002211085.1 328 127039 0.2575235343534824 100.0 ["u11", "u12", "u6atac"] PHallii_v3.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/211/085/GCF_002211085.1_PHallii_v3.1 GCF_002211085.1;PRJNA482138;SAMN03003198;NCQW00000000.2;representative genome;206008;206008;Panicum hallii;strain=FIL2;;latest;Chromosome;Major;Full;2018/05/01;PHallii_v3.1;DOE Joint Genome Institute;GCA_002211085.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/211/085/GCF_002211085.1_PHallii_v3.1;;;na 1
53036 Sphagnum fallax Sphagnaceae Sphagnales Streptophyta Sfallax_522 329 127835 0.2567023501139165 100.0 ["u11", "u12", "u6atac"] .   . 1
2711 Citrus sinensis Rutaceae Sapindales Streptophyta GCF_000317415.1 301 117442 0.2556415243369032 99.6 ["u11", "u12", "u6atac"] Csi_valencia_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/317/415/GCF_000317415.1_Csi_valencia_1.0 GCF_000317415.1;PRJNA225998;SAMN02981414;AJPS00000000.1;representative genome;2711;2711;Citrus sinensis;cultivar=Valencia;;latest;Chromosome;Major;Full;2012/12/12;Csi_valencia_1.0;China sweet orange genome project;GCA_000317415.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/317/415/GCF_000317415.1_Csi_valencia_1.0;;;na 1
3659 Cucumis sativus Cucurbitaceae Cucurbitales Streptophyta GCF_000004075.3 270 105531 0.2551960756514588 99.6 ["u11", "u12", "u6atac"] Cucumber_9930_V3 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/004/075/GCF_000004075.3_Cucumber_9930_V3 GCF_000004075.3;PRJNA182750;SAMN02953750;ACHR00000000.3;representative genome;3659;3659;Cucumis sativus;cultivar=9930;;latest;Chromosome;Major;Full;2019/11/15;Cucumber_9930_V3;The Cucumber Genome Initiative;GCA_000004075.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/004/075/GCF_000004075.3_Cucumber_9930_V3;;;na 1
22663 Punica granatum Lythraceae Myrtales Streptophyta GCF_007655135.1 306 119802 0.2547707063642721 100.0 ["u11", "u12", "u6atac"] ASM765513v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/655/135/GCF_007655135.1_ASM765513v2 GCF_007655135.1;PRJNA580467;SAMN05193489;MABG00000000.2;representative genome;22663;22663;Punica granatum;;Tunisia-2019;latest;Chromosome;Major;Full;2019/10/22;ASM765513v2;Chinese Academy of Agricultural Sciences;GCA_007655135.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/655/135/GCF_007655135.1_ASM765513v2;;;na 1
4265 Cynara cardunculus Asteraceae Asterales Streptophyta GCF_001531365.1 326 127724 0.2545880515423662 99.6 ["u11", "u12", "u6atac"] CcrdV1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/531/365/GCF_001531365.1_CcrdV1 GCF_001531365.1;PRJNA453787;SAMN03402638;LEKV00000000.1;representative genome;59895;4265;Cynara cardunculus var. scolymus;;2C;latest;Chromosome;Major;Full;2018/04/17;CcrdV1;Compositae Genome Project;GCA_001531365.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/531/365/GCF_001531365.1_CcrdV1;;;na 1
15368 Brachypodium distachyon Poaceae Poales Streptophyta GCF_000005505.3 318 124610 0.254546618852459 99.6 ["u11", "u12", "u6atac"] Brachypodium_distachyon_v3.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/505/GCF_000005505.3_Brachypodium_distachyon_v3.0 GCF_000005505.3;PRJNA74771;SAMN02981254;ADDN00000000.3;representative genome;15368;15368;Brachypodium distachyon;strain=Bd21;;latest;Chromosome;Major;Full;2018/01/24;Brachypodium_distachyon_v3.0;JGI-PGF;GCA_000005505.4;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/505/GCF_000005505.3_Brachypodium_distachyon_v3.0;;;na 1
4555 Setaria italica Poaceae Poales Streptophyta GCF_000263155.2 331 129893 0.2541774173731416 99.6 ["u11", "u12", "u6atac"] Setaria_italica_v2.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/263/155/GCF_000263155.2_Setaria_italica_v2.0 GCF_000263155.2;PRJNA207554;SAMN02981383;AGNK00000000.2;representative genome;4555;4555;Setaria italica;strain=Yugu1;;latest;Chromosome;Major;Full;2015/10/30;Setaria_italica_v2.0;JGI-PGF;GCA_000263155.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/263/155/GCF_000263155.2_Setaria_italica_v2.0;;;na 1
28532 Tarenaya hassleriana Cleomaceae Brassicales Streptophyta GCF_000463585.1 356 139708 0.2541695225039981 100.0 ["u11", "u12", "u6atac"] ASM46358v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/463/585/GCF_000463585.1_ASM46358v1 GCF_000463585.1;PRJNA268022;SAMN02981509;AOUI00000000.1;representative genome;28532;28532;Tarenaya hassleriana;;;latest;Scaffold;Major;Full;2013/09/05;ASM46358v1;Beijing Genomics Institution-shenzhen;GCA_000463585.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/463/585/GCF_000463585.1_ASM46358v1;;;na 1
57918 Fragaria vesca Rosaceae Rosales Streptophyta GCF_000184155.1 294 115634 0.2536056862880408 98.4 ["u11", "u12", "u6atac"] FraVesHawaii_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/184/155/GCF_000184155.1_FraVesHawaii_1.0 GCF_000184155.1;PRJNA66853;SAMN00120060;AEMH00000000.1;representative genome;101020;57918;Fragaria vesca subsp. vesca;;;latest;Chromosome;Major;Full;2011/02/24;FraVesHawaii_1.0;Virginia Bioinformatics Institute;GCA_000184155.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/184/155/GCF_000184155.1_FraVesHawaii_1.0;;;na 1
29780 Mangifera indica Anacardiaceae Sapindales Streptophyta GCF_011075055.1 430 169528 0.2530036832629238 100.0 ["u11", "u12", "u6atac"] CATAS_Mindica_2.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/075/055/GCF_011075055.1_CATAS_Mindica_2.1 GCF_011075055.1;PRJNA771370;SAMN09899728;JAAHBS000000000.1;representative genome;29780;29780;Mangifera indica;cultivar=Alphonso;;latest;Chromosome;Major;Full;2020/03/10;CATAS_Mindica_2.1;Beijing Institute of Genomics, Chinese Academy of Sciences;GCA_011075055.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/075/055/GCF_011075055.1_CATAS_Mindica_2.1;;;na 1
4686 Asparagus officinalis Asparagaceae Asparagales Streptophyta GCF_001876935.1 345 136037 0.2529659339208986 96.9 ["u11", "u12", "u6atac"] Aspof.V1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/876/935/GCF_001876935.1_Aspof.V1 GCF_001876935.1;PRJNA376608;SAMN04606231;MPDI00000000.1;representative genome;4686;4686;Asparagus officinalis;;;latest;Chromosome;Major;Full;2017/02/06;Aspof.V1;University of Georgia;GCA_001876935.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/876/935/GCF_001876935.1_Aspof.V1;;;na 1
3750 Malus domestica Rosaceae Rosales Streptophyta GCF_002114115.1 478 188571 0.2528445006321113 99.6 ["u11", "u12", "u6atac"] ASM211411v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/114/115/GCF_002114115.1_ASM211411v1 GCF_002114115.1;PRJNA534520;SAMN05603590;MJAX00000000.1;representative genome;3750;3750;Malus domestica;cultivar=Golden Delicious;X9273 #13;latest;Chromosome;Major;Full;2017/05/03;ASM211411v1;IRHS;GCA_002114115.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/114/115/GCF_002114115.1_ASM211411v1;;;na 1
225117 Pyrus x bretschneideri Rosaceae Rosales Streptophyta GCF_000315295.1 467 184252 0.2528164401063236 95.3 ["u11", "u12", "u6atac"] Pbr_v1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/315/295/GCF_000315295.1_Pbr_v1.0 GCF_000315295.1;PRJNA259338;SAMN01797448;AJSU00000000.1;representative genome;225117;225117;Pyrus x bretschneideri;cultivar=Dangshansuli;;latest;Scaffold;Major;Full;2012/12/03;Pbr_v1.0;Nanjing Agricultural University;GCA_000315295.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/315/295/GCF_000315295.1_Pbr_v1.0;;;na 1
3914 Vigna angularis Fabaceae Fabales Streptophyta GCF_001190045.1 324 128084 0.2523207276805183 100.0 ["u11", "u12", "u4atac", "u6atac"] Vigan1.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/190/045/GCF_001190045.1_Vigan1.1 GCF_001190045.1;PRJNA328963;SAMN03074979;JZJH00000000.1;representative genome;3914;3914;Vigna angularis;cultivar=Jingnong 6;;latest;Chromosome;Major;Full;2015/07/31;Vigan1.1;Beijing University of Agriculture;GCA_001190045.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/190/045/GCF_001190045.1_Vigan1.1;;;na 1
210225 Nymphaea colorata Nymphaeaceae Nymphaeales Streptophyta GCF_008831285.1 266 105159 0.2523120701920797 100.0 ["u11", "u12", "u4atac", "u6atac"] ASM883128v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/831/285/GCF_008831285.1_ASM883128v1 GCF_008831285.1;PRJNA587754;SAMN12766378;VYXN00000000.1;representative genome;210225;210225;Nymphaea colorata;;Beijing-Zhang1983;latest;Chromosome;Major;Full;2019/10/07;ASM883128v1;Fujian Agriculture and Forestry University;GCA_008831285.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/831/285/GCF_008831285.1_ASM883128v1;;;na 1
263995 Acorus americanus Acoraceae Acorales Streptophyta Aamericanus_v1_1 277 109720 0.2518250497740847 99.6 ["u11", "u12", "u4atac", "u6atac"] .   . 1
4530 Oryza sativa Poaceae Poales Streptophyta GCF_001433935.1 339 134379 0.2516367523270832 99.6 ["u11", "u12", "u6atac"] IRGSP-1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/433/935/GCF_001433935.1_IRGSP-1.0 GCF_001433935.1;PRJNA122;SAMD00000397;;representative genome;39947;4530;Oryza sativa Japonica Group;;;latest;Chromosome;Major;Full;2015/10/10;IRGSP-1.0;National Institute of Agrobiological Sciences;GCA_001433935.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/433/935/GCF_001433935.1_IRGSP-1.0;;;na 1
4556 Setaria viridis Poaceae Poales Streptophyta GCF_005286985.1 335 133026 0.2511978764406385 100.0 ["u11", "u12", "u6atac"] Setaria_viridis_v2.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/286/985/GCF_005286985.1_Setaria_viridis_v2.0 GCF_005286985.1;PRJNA633601;SAMN05660902;SNSE00000000.1;representative genome;4556;4556;Setaria viridis;cultivar=A10;;latest;Chromosome;Major;Full;2019/05/14;Setaria_viridis_v2.0;DOE Joint Genome Institute;GCA_005286985.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/286/985/GCF_005286985.1_Setaria_viridis_v2.0;;;na 1
52141 Brachypodium mexicanum Poaceae Poales Streptophyta Bmexicanum_v1_1 585 232505 0.2509760178471835 100.0 ["u11", "u12", "u6atac"] .   . 1
106335 Hibiscus syriacus Malvaceae Malvales Streptophyta GCF_006381635.1 1119 444779 0.2509542541119269 99.2 ["u11", "u12", "u6atac"] ASM638163v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/381/635/GCF_006381635.1_ASM638163v2 GCF_006381635.1;PRJNA691360;SAMN11494363;VEPZ00000000.2;representative genome;106335;106335;Hibiscus syriacus;cultivar=Baekdansim;YM2019G1;latest;Scaffold;Major;Full;2019/11/18;ASM638163v2;Korea Research Institute of Bioscience and Biotechnology;GCA_006381635.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/381/635/GCF_006381635.1_ASM638163v2;;;na 1
3641 Theobroma cacao Malvaceae Malvales Streptophyta GCF_000208745.1 276 110026 0.2502221174593389 99.6 ["u11", "u12", "u6atac"] Criollo_cocoa_genome_V2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/208/745/GCF_000208745.1_Criollo_cocoa_genome_V2 GCF_000208745.1;PRJNA341501;SAMEA4028428;FLSQ00000000.1;representative genome;3641;3641;Theobroma cacao;cultivar=B97-61/B2;;latest;Chromosome;Major;Full;2016/07/09;Criollo_cocoa_genome_V2;CIRAD;GCA_000208745.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/208/745/GCF_000208745.1_Criollo_cocoa_genome_V2;;;na 1
49495 Ceratopteris richardii Pteridaceae Polypodiales Streptophyta Crichardii_v2_1 307 122523 0.2499389399983717 97.6 ["u11", "u12", "u6atac"] .   . 1
157791 Vigna radiata Fabaceae Fabales Streptophyta GCF_000741045.1 324 129395 0.2497706581148482 99.6 ["u11", "u12", "u4atac", "u6atac"] Vradiata_ver6 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/741/045/GCF_000741045.1_Vradiata_ver6 GCF_000741045.1;PRJNA301363;SAMN02720863;JJMO00000000.1;representative genome;3916;157791;Vigna radiata var. radiata;cultivar=VC1973A;;latest;Chromosome;Major;Full;2015/10/28;Vradiata_ver6;Seoul National University;GCA_000741045.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/741/045/GCF_000741045.1_Vradiata_ver6;;;na 1
161934 Beta vulgaris Chenopodiaceae Caryophyllales Streptophyta GCF_000511025.2 268 107039 0.2497507152375893 99.6 ["u11", "u12", "u6atac"] RefBeet-1.2.2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/511/025/GCF_000511025.2_RefBeet-1.2.2 GCF_000511025.2;PRJNA268352;SAMN02182557;AYZS00000000.2;representative genome;3555;161934;Beta vulgaris subsp. vulgaris;;;latest;Chromosome;Major;Full;2015/07/07;RefBeet-1.2.2;Beta vulgaris resource;GCA_000511025.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/511/025/GCF_000511025.2_RefBeet-1.2.2;;;na 1
458696 Tripterygium wilfordii Celastraceae Celastrales Streptophyta GCF_013401445.1 403 160977 0.249721155037799 100.0 ["u11", "u12", "u6atac"] ASM1340144v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/401/445/GCF_013401445.1_ASM1340144v1 GCF_013401445.1;PRJNA689611;SAMN11634134;JAAARO000000000.1;representative genome;458696;458696;Tripterygium wilfordii;;XIE 37;latest;Chromosome;Major;Full;2020/07/13;ASM1340144v1;Capital medical University;GCA_013401445.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/401/445/GCF_013401445.1_ASM1340144v1;;;na 1
4577 Zea mays Poaceae Poales Streptophyta GCF_902167145.1 426 170185 0.2496908171219909 99.2 ["u11", "u12", "u6atac"] Zm-B73-REFERENCE-NAM-5.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/167/145/GCF_902167145.1_Zm-B73-REFERENCE-NAM-5.0 GCF_902167145.1;PRJNA655717;SAMEA5569141;CABHLF000000000.1;representative genome;4577;4577;Zea mays;cultivar=B73;;latest;Chromosome;Major;Full;2020/03/21;Zm-B73-REFERENCE-NAM-5.0;MaizeGDB;GCA_902167145.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/167/145/GCF_902167145.1_Zm-B73-REFERENCE-NAM-5.0;;;na 1
29655 Zostera marina Zosteraceae Alismatales Streptophyta GCA_001185155.1 220 87900 0.2496595551520653 96.5 ["u11", "u12", "u6atac"] Zosma_marina.v.2.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/185/155/GCA_001185155.1_Zosma_marina.v.2.1 GCA_001185155.1;PRJNA41721;SAMN00991190;LFYR00000000.1;representative genome;29655;29655;Zostera marina;strain=Finnish;;latest;Scaffold;Major;Full;2015/07/22;Zosma_marina.v.2.1;JGI-PGF;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/185/155/GCA_001185155.1_Zosma_marina.v.2.1;;;na 1
75702 Populus euphratica Salicaceae Malpighiales Streptophyta GCF_000495115.1 408 163240 0.2493156042236996 99.6 ["u11", "u12", "u6atac"] PopEup_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/495/115/GCF_000495115.1_PopEup_1.0 GCF_000495115.1;PRJNA268063;SAMN02981499;AOFL00000000.1;representative genome;75702;75702;Populus euphratica;;;latest;Scaffold;Major;Full;2014/08/12;PopEup_1.0;Lanzhou University;GCA_000495115.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/495/115/GCF_000495115.1_PopEup_1.0;;;na 1
4081 Solanum lycopersicum Solanaceae Solanales Streptophyta GCF_000188115.4 315 126053 0.2492719675867308 99.2 ["u11", "u12", "u6atac"] SL3.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/188/115/GCF_000188115.4_SL3.0 GCF_000188115.4;PRJNA66163;SAMN02981290;AEKE00000000.3;representative genome;4081;4081;Solanum lycopersicum;cultivar=Heinz 1706;;latest;Chromosome;Major;Full;2018/04/18;SL3.0;Solanaceae Genomics Project;GCA_000188115.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/188/115/GCF_000188115.4_SL3.0;;;na 1
1071399 Brachypodium stacei Poaceae Poales Streptophyta Bstacei_v1_1 300 120395 0.248560420895646 98.8 ["u11", "u12", "u4atac", "u6atac"] .   . 1
60698 Macadamia integrifolia Proteaceae Proteales Streptophyta GCF_013358625.1 354 142299 0.2481546129418939 96.5 ["u11", "u12", "u6atac"] SCU_Mint_v3 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/358/625/GCF_013358625.1_SCU_Mint_v3 GCF_013358625.1;PRJNA748012;SAMN13508564;JAAEEG000000000.1;representative genome;60698;60698;Macadamia integrifolia;cultivar=HAES 741;;latest;Chromosome;Major;Full;2020/06/23;SCU_Mint_v3;Southern Cross University;GCA_013358625.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/358/625/GCF_013358625.1_SCU_Mint_v3;;;na 1
3694 Populus trichocarpa Salicaceae Malpighiales Streptophyta GCF_000002775.4 402 161954 0.2476040306486979 99.6 ["u11", "u12", "u6atac"] Pop_tri_v3 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/775/GCF_000002775.4_Pop_tri_v3 GCF_000002775.4;PRJNA17973;SAMN02953657;AARH00000000.3;representative genome;3694;3694;Populus trichocarpa;;Nisqually-1;latest;Chromosome;Major;Full;2018/01/24;Pop_tri_v3;US DOE Joint Genome Institute (JGI;GCA_000002775.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/775/GCF_000002775.4_Pop_tri_v3;;;na 1
29729 Gossypium arboreum Malvaceae Malvales Streptophyta GCF_000612285.1 415 167461 0.24720627129548 98.8 ["u11", "u12", "u4atac", "u6atac"] Gossypium_arboreum_v1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/612/285/GCF_000612285.1_Gossypium_arboreum_v1.0 GCF_000612285.1;PRJNA335838;SAMN02981570;AYOE00000000.1;representative genome;29729;29729;Gossypium arboreum;cultivar=Shixiya1;;latest;Chromosome;Major;Full;2015/09/28;Gossypium_arboreum_v1.0;BGI;GCA_000612285.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/612/285/GCF_000612285.1_Gossypium_arboreum_v1.0;;;na 1
55571 Dioscorea alata Dioscoreaceae Dioscoreales Streptophyta Dalata_550 281 113465 0.2470416542120162 98.4 ["u11", "u12", "u6atac"] .   . 1
3847 Glycine max Fabaceae Fabales Streptophyta GCF_000004515.6 595 240692 0.2465943047076718 100.0 ["u11", "u12", "u6atac"] Glycine_max_v4.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/004/515/GCF_000004515.6_Glycine_max_v4.0 GCF_000004515.6;PRJNA48389;SAMN00002965;ACUP00000000.4;representative genome;3847;3847;Glycine max;cultivar=Williams 82;;latest;Chromosome;Major;Full;2021/03/10;Glycine_max_v4.0;US DOE Joint Genome Institute (JGI-PGF);GCA_000004515.5;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/004/515/GCF_000004515.6_Glycine_max_v4.0;;;na 1
3821 Cajanus cajan Fabaceae Fabales Streptophyta GCF_000340665.1 335 135722 0.2462203341246683 98.0 ["u11", "u12", "u6atac"] C.cajan_V1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/340/665/GCF_000340665.1_C.cajan_V1.0 GCF_000340665.1;PRJNA376605;SAMN02981370;AGCT00000000.1;representative genome;3821;3821;Cajanus cajan;;;latest;Chromosome;Major;Full;2016/09/29;C.cajan_V1.0;BGI;GCA_000340665.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/340/665/GCF_000340665.1_C.cajan_V1.0;;;na 1
96939 Vitis riparia Vitaceae Vitales Streptophyta GCF_004353265.1 318 129091 0.2457325224675254 99.6 ["u11", "u12", "u6atac"] EGFV_Vit.rip_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/353/265/GCF_004353265.1_EGFV_Vit.rip_1.0 GCF_004353265.1;PRJNA636344;SAMN10662253;SJAQ00000000.1;representative genome;96939;96939;Vitis riparia;cultivar=Riparia Gloire de Montpellier;1030;latest;Chromosome;Major;Full;2019/04/16;EGFV_Vit.rip_1.0;Bordeaux University;GCA_004353265.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/353/265/GCF_004353265.1_EGFV_Vit.rip_1.0;;;na 1
3848 Glycine soja Fabaceae Fabales Streptophyta GCF_004193775.1 603 245165 0.2453533413625858 100.0 ["u11", "u12", "u6atac"] ASM419377v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/193/775/GCF_004193775.1_ASM419377v2 GCF_004193775.1;PRJNA525136;SAMN09862384;QZWG00000000.1;representative genome;3848;3848;Glycine soja;cultivar=W05;;latest;Chromosome;Major;Full;2019/02/21;ASM419377v2;The Chinese University of Hong Kong;GCA_004193775.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/193/775/GCF_004193775.1_ASM419377v2;;;na 1
3816 Abrus precatorius Fabaceae Fabales Streptophyta GCF_003935025.1 302 122794 0.2453369727692207 98.4 ["u11", "u12", "u6atac"] Abrus_2018 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/935/025/GCF_003935025.1_Abrus_2018 GCF_003935025.1;PRJNA510631;SAMN10039699;QYUI00000000.1;representative genome;3816;3816;Abrus precatorius;;BTA;latest;Scaffold;Major;Full;2018/12/11;Abrus_2018;Los Alamos National Laboratory;GCA_003935025.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/935/025/GCF_003935025.1_Abrus_2018;;;na 1
72664 Eutrema salsugineum Brassicaceae Brassicales Streptophyta GCF_000478725.1 303 123379 0.2449831018256496 99.6 ["u11", "u12", "u4atac", "u6atac"] Eutsalg1_0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/478/725/GCF_000478725.1_Eutsalg1_0 GCF_000478725.1;PRJNA231865;SAMN02981485;ANOA00000000.1;representative genome;72664;72664;Eutrema salsugineum;;;latest;Scaffold;Major;Full;2013/11/05;Eutsalg1_0;Joint Genome Institute;GCA_000478725.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/478/725/GCF_000478725.1_Eutsalg1_0;;;na 1
359867 Myagrum perfoliatum Brassicaceae Brassicales Streptophyta Mperfoliatum_583 286 116533 0.2448231880087999 100.0 ["u11", "u12", "u4atac", "u6atac"] .   . 1
102211 Benincasa hispida Cucurbitaceae Cucurbitales Streptophyta GCF_009727055.1 260 105972 0.2447473454326379 99.2 ["u11", "u12", "u6atac"] ASM972705v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/727/055/GCF_009727055.1_ASM972705v1 GCF_009727055.1;PRJNA691418;SAMN08364809;WEIL00000000.1;representative genome;102211;102211;Benincasa hispida;cultivar=B227;;latest;Chromosome;Major;Full;2019/12/03;ASM972705v1;Chinese Academy of Agricultural Sciences;GCA_009727055.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/727/055/GCF_009727055.1_ASM972705v1;;;na 1
4558 Sorghum bicolor Poaceae Poales Streptophyta GCF_000003195.3 320 130618 0.2443904748812415 100.0 ["u11", "u12", "u6atac"] Sorghum_bicolor_NCBIv3 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/195/GCF_000003195.3_Sorghum_bicolor_NCBIv3 GCF_000003195.3;PRJNA38691;SAMN02953738;ABXC00000000.3;representative genome;4558;4558;Sorghum bicolor;cultivar=BTx623;;latest;Chromosome;Major;Full;2017/04/07;Sorghum_bicolor_NCBIv3;Sorghum Consortium;GCA_000003195.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/195/GCF_000003195.3_Sorghum_bicolor_NCBIv3;;;na 1
4097 Nicotiana tabacum Solanaceae Solanales Streptophyta GCF_000715135.1 657 268362 0.2442206684286239 98.8 ["u11", "u12", "u6atac"] Ntab-TN90 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/715/135/GCF_000715135.1_Ntab-TN90 GCF_000715135.1;PRJNA319578;SAMN02316627;AYMY00000000.1;representative genome;4097;4097;Nicotiana tabacum;cultivar=TN90;;latest;Scaffold;Major;Full;2014/05/29;Ntab-TN90;Philip Morris International R&D;GCA_000715135.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/715/135/GCF_000715135.1_Ntab-TN90;;;na 1
66656 Durio zibethinus Malvaceae Malvales Streptophyta GCF_002303985.1 499 204374 0.2435655259599849 100.0 ["u11", "u12", "u4atac", "u6atac"] Duzib1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/303/985/GCF_002303985.1_Duzib1.0 GCF_002303985.1;PRJNA407962;SAMN07563003;NSDW00000000.1;representative genome;66656;66656;Durio zibethinus;cultivar=Musang King;D1;latest;Scaffold;Major;Full;2017/09/15;Duzib1.0;Thorn Biosystems;GCA_002303985.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/303/985/GCF_002303985.1_Duzib1.0;;;na 1
3983 Manihot esculenta Euphorbiaceae Malpighiales Streptophyta GCF_001659605.2 354 145193 0.2432204030313232 100.0 ["u11", "u12", "u6atac"] M.esculenta_v8 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/659/605/GCF_001659605.2_M.esculenta_v8 GCF_001659605.2;PRJNA394209;SAMN04116956;LTYI00000000.2;representative genome;3983;3983;Manihot esculenta;cultivar=AM560-2;;latest;Chromosome;Major;Full;2021/08/13;M.esculenta_v8;DOE-Joint Genome Institute;GCA_001659605.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/659/605/GCF_001659605.2_M.esculenta_v8;;;na 1
326968 Ziziphus jujuba Rhamnaceae Rosales Streptophyta GCF_000826755.1 340 139477 0.2431750073310112 95.3 ["u11", "u12", "u6atac"] ZizJuj_1.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/826/755/GCF_000826755.1_ZizJuj_1.1 GCF_000826755.1;PRJNA315994;SAMN02918186;JREP00000000.1;representative genome;326968;326968;Ziziphus jujuba;cultivar=Dongzao;;latest;Chromosome;Major;Full;2015/02/06;ZizJuj_1.1;Agricultural University of Hebei;GCA_000826755.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/826/755/GCF_000826755.1_ZizJuj_1.1;;;na 1
3917 Vigna unguiculata Fabaceae Fabales Streptophyta GCF_004118075.1 335 137511 0.2430248248044919 99.6 ["u11", "u12", "u4atac", "u6atac"] ASM411807v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/118/075/GCF_004118075.1_ASM411807v1 GCF_004118075.1;PRJNA521068;SAMN06674009;NBOW00000000.1;representative genome;3917;3917;Vigna unguiculata;cultivar=IT97K-499-35;;latest;Chromosome;Major;Full;2019/01/30;ASM411807v1;University of California, Riverside;GCA_004118075.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/118/075/GCF_004118075.1_ASM411807v1;;;na 1
62337 Miscanthus sinensis Poaceae Poales Streptophyta Msinensis_v7_1 593 243555 0.2428854629159362 97.3 ["u11", "u12", "u6atac"] .   . 1
51240 Juglans regia Juglandaceae Fagales Streptophyta GCF_001411555.2 366 150529 0.2425527684813943 100.0 ["u11", "u12", "u6atac"] Walnut 2.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/411/555/GCF_001411555.2_Walnut_2.0 GCF_001411555.2;PRJNA350852;SAMN03704235;LIHL00000000.2;representative genome;51240;51240;Juglans regia;cultivar=Chandler;;latest;Chromosome;Major;Full;2020/07/08;Walnut 2.0;Johns Hopkins University;GCA_001411555.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/411/555/GCF_001411555.2_Walnut_2.0;;;na 1
3483 Cannabis sativa Cannabaceae Rosales Streptophyta GCF_900626175.2 286 117743 0.2423133297748858 97.3 ["u11", "u12", "u6atac"] cs10 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/626/175/GCF_900626175.2_cs10 GCF_900626175.2;PRJNA560384;SAMEA5040675;UZAU00000000.1;representative genome;3483;3483;Cannabis sativa;;;latest;Chromosome;Minor;Full;2019/02/14;cs10;HARVARD OEB;GCA_900626175.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/626/175/GCF_900626175.2_cs10;;;na 1
158149 Paspalum vaginatum Poaceae Poales Streptophyta Pvaginatum_v3_1 319 131416 0.2421528067711694 99.6 ["u11", "u12", "u6atac"] .   . 1
49451 Nicotiana attenuata Solanaceae Solanales Streptophyta GCF_001879085.1 355 146335 0.2420069534392255 97.6 ["u11", "u12", "u6atac"] NIATTr2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/879/085/GCF_001879085.1_NIATTr2 GCF_001879085.1;PRJNA355166;SAMN04590212;MJEQ00000000.1;representative genome;49451;49451;Nicotiana attenuata;strain=UT;;latest;Chromosome;Major;Full;2016/11/15;NIATTr2;Max Planck Institute for Chemical Ecology;GCA_001879085.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/879/085/GCF_001879085.1_NIATTr2;;;na 1
2249226 Juglans microcarpa x juglans regia Juglandaceae Fagales Streptophyta GCF_004785595.1 354 145991 0.2418941542246062 99.6 ["u11", "u12", "u6atac"] Jm3101_v1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/785/595/GCF_004785595.1_Jm3101_v1.0 GCF_004785595.1;PRJNA726248;SAMN09474938;QKZX00000000.1;representative genome;2249226;2249226;Juglans microcarpa x Juglans regia;;MS1-56;latest;Chromosome;Major;Full;2019/04/16;Jm3101_v1.0;University of California, Davis;GCA_004785595.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/785/595/GCF_004785595.1_Jm3101_v1.0;;;na 1
34275 Gossypium mustelinum Malvaceae Malvales Streptophyta Gmustelinum_v1_1 771 318014 0.2418557962262967 100.0 ["u11", "u12", "u4atac", "u6atac"] .   . 1
49369 Coffea eugenioides Rubiaceae Gentianales Streptophyta GCF_003713205.1 306 126441 0.2414258325640843 98.0 ["u11", "u12", "u6atac"] Ceug_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/713/205/GCF_003713205.1_Ceug_1.0 GCF_003713205.1;PRJNA508372;SAMN10269643;RHJT00000000.1;representative genome;49369;49369;Coffea eugenioides;;CCC68of;latest;Chromosome;Major;Full;2018/11/08;Ceug_1.0;Johns Hopkins University;GCA_003713205.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/713/205/GCF_003713205.1_Ceug_1.0;;;na 1
3218 Physcomitrium patens Funariaceae Funariales Streptophyta GCF_000002425.4 308 127281 0.2414001207000603 100.0 ["u11", "u12", "u6atac"] Phypa V3 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/425/GCF_000002425.4_Phypa_V3 GCF_000002425.4;PRJNA28131;SAMN00120126;ABEU00000000.2;representative genome;3218;3218;Physcomitrium patens;ecotype=Gransden 2004;;latest;Chromosome;Major;Full;2018/01/24;Phypa V3;Moss Genome Consortium;GCA_000002425.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/425/GCF_000002425.4_Phypa_V3;;;na 1
3634 Gossypium barbadense Malvaceae Malvales Streptophyta Gbarbadense_v1_1 769 318084 0.2411769686971739 100.0 ["u11", "u12", "u4atac", "u6atac"] .   . 1
28526 Solanum pennellii Solanaceae Solanales Streptophyta GCF_001406875.1 325 134461 0.2411229652931313 99.6 ["u11", "u12", "u6atac"] SPENNV200 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/406/875/GCF_001406875.1_SPENNV200 GCF_001406875.1;PRJNA256426;SAMEA3283146;;representative genome;28526;28526;Solanum pennellii;;;latest;Chromosome;Major;Full;2014/07/11;SPENNV200;RWTH Aachen;GCA_001406875.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/406/875/GCF_001406875.1_SPENNV200;;;na 1
13443 Coffea arabica Rubiaceae Gentianales Streptophyta GCF_003713225.1 513 212287 0.2410714285714285 98.8 ["u11", "u12", "u6atac"] Cara_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/713/225/GCF_003713225.1_Cara_1.0 GCF_003713225.1;PRJNA506972;SAMN10272287;RHJU00000000.1;representative genome;13443;13443;Coffea arabica;cultivar=Caturra red;CCC135-36;latest;Chromosome;Major;Full;2018/11/08;Cara_1.0;Johns Hopkins University;GCA_003713225.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/713/225/GCF_003713225.1_Cara_1.0;;;na 1
81970 Arabidopsis halleri Brassicaceae Brassicales Streptophyta Ahalleri_v1_1 253 104890 0.2406246730643029 90.2 ["u12", "u6atac"] .   . 1
37690 Citrus trifoliata Rutaceae Sapindales Streptophyta Ptrifoliata_v1_3_1 262 108906 0.2399970687380917 98.4 ["u11", "u12", "u6atac"] .   . 1
34277 Gossypium tomentosum Malvaceae Malvales Streptophyta Gtomentosum_v1_1 788 328584 0.2392431657821551 100.0 ["u11", "u12", "u4atac", "u6atac"] .   . 1

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CREATE TABLE "genomes" (
"taxonomy_id" INTEGER,
  "species" TEXT,
  "family" TEXT,
  "order" TEXT,
  "phylum" TEXT,
  "accession" TEXT,
  "n_minor_introns" INTEGER,
  "n_major_introns" INTEGER,
  "percent_minor_introns" REAL,
  "busco_score" REAL,
  "minor_snRNAs" TEXT,
  "genome_version" TEXT,
  "source_url" TEXT,
  "source_metadata" TEXT,
  "minor_intron+" INTEGER
  ,PRIMARY KEY ([taxonomy_id])
);
CREATE INDEX [idx_genomes_phylum]
    ON [genomes] ([phylum]);
CREATE INDEX [idx_genomes_order]
    ON [genomes] ([order]);
CREATE INDEX [idx_genomes_family]
    ON [genomes] ([family]);