genomes

Data license: ODbL · Data source: Larue & Roy, 2023

taxonomy_id
INTEGER (primary key), unique identifier for each species
species
TEXT, binomial name of the species
family
TEXT, taxonomic family of the species
order
TEXT, taxonomic order of the species
phylum
TEXT, taxonomic phylum of the species
accession
TEXT, accession number of the genome assembly
n_minor_introns
INTEGER, total number of minor introns in the genome
n_major_introns
INTEGER, total number of major introns in the genome
percent_minor_introns
REAL, percentage of minor introns in the genome
busco_score
REAL, BUSCO score assessing the genome assembly completeness (vs. eukaryota_odb10)
minor_snRNAs
TEXT, minor snRNAs found in the annotated transcriptome
genome_version
TEXT, version of the genome assembly
source_url
TEXT, URL for the source genome/annotation files
source_metadata
TEXT, additional metadata from the original data source
minor_intron+
INTEGER, indicates if the species is inferred to contain real minor introns (1) or not (0)

256 rows where minor_snRNAs = "["u11", "u12", "u6atac"]" sorted by percent_minor_introns descending

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Suggested facets: phylum, minor_snRNAs (array)

taxonomy_id species family order phylum accession n_minor_introns n_major_introns percent_minor_introns ▲ busco_score minor_snRNAs genome_version source_url source_metadata minor_intron+
5791 Physarum polycephalum Physaraceae Physariida Evosea GCA_000413255.3 20295 159710 11.27468681425516 66.3 ["u11", "u12", "u6atac"] Physarum_polycephalum-10.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/255/GCA_000413255.3_Physarum_polycephalum-10.0 GCA_000413255.3;PRJNA12851;SAMN02839457;ATCM00000000.3;representative genome;5791;5791;Physarum polycephalum;strain=LU352;;latest;Scaffold;Major;Full;2014/06/30;Physarum_polycephalum-10.0;WUGSC;na;na;ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/413/255/GCA_000413255.3_Physarum_polycephalum-10.0;;;na 1
57068 Acanthisitta chloris Acanthisittidae Passeriformes Chordata GCF_000695815.1 446 120410 0.3690342225458397 60.4 ["u11", "u12", "u6atac"] ASM69581v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/815/GCF_000695815.1_ASM69581v1 GCF_000695815.1;PRJNA253841;SAMN02318032;JJRS00000000.1;representative genome;57068;57068;Acanthisitta chloris;;BGI_N310;latest;Scaffold;Major;Full;2014/05/27;ASM69581v1;BGI;GCA_000695815.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/695/815/GCF_000695815.1_ASM69581v1;;;na 1
50402 Charadrius vociferus Charadriidae Charadriiformes Chordata GCF_000708025.1 503 142517 0.3516990630681024 88.2 ["u11", "u12", "u6atac"] ASM70802v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/708/025/GCF_000708025.1_ASM70802v2 GCF_000708025.1;PRJNA263452;SAMN02296710;JMFX00000000.2;representative genome;50402;50402;Charadrius vociferus;;BGI_N301;latest;Scaffold;Major;Full;2014/08/05;ASM70802v2;BGI;GCA_000708025.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/708/025/GCF_000708025.1_ASM70802v2;;;na 1
188344 Leptosomus discolor Leptosomidae Coraciiformes Chordata GCF_000691785.1 418 119316 0.3491071875991782 61.2 ["u11", "u12", "u6atac"] ASM69178v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/785/GCF_000691785.1_ASM69178v1 GCF_000691785.1;PRJNA263616;SAMN02333687;JJRK00000000.1;representative genome;188344;188344;Leptosomus discolor;;BGI_N330;latest;Scaffold;Major;Full;2014/05/23;ASM69178v1;BGI;GCA_000691785.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/785/GCF_000691785.1_ASM69178v1;;;na 1
44394 Zonotrichia albicollis Passerellidae Passeriformes Chordata GCF_000385455.1 502 144378 0.3464936499171728 75.7 ["u11", "u12", "u6atac"] Zonotrichia_albicollis-1.0.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/385/455/GCF_000385455.1_Zonotrichia_albicollis-1.0.1 GCF_000385455.1;PRJNA217032;SAMN02981528;ARWJ00000000.1;representative genome;44394;44394;Zonotrichia albicollis;;Tan morph;latest;Scaffold;Major;Full;2013/04/30;Zonotrichia_albicollis-1.0.1;White-throated sparrow consortium;GCA_000385455.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/385/455/GCF_000385455.1_Zonotrichia_albicollis-1.0.1;;;na 1
9238 Pygoscelis adeliae Spheniscidae Sphenisciformes Chordata GCF_000699105.1 481 139143 0.3444966481407208 82.7 ["u11", "u12", "u6atac"] ASM69910v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/105/GCF_000699105.1_ASM69910v1 GCF_000699105.1;PRJNA261076;SAMN02596601;JMFP00000000.1;representative genome;9238;9238;Pygoscelis adeliae;;BGI_AS28;latest;Scaffold;Major;Full;2014/06/06;ASM69910v1;BGI;GCA_000699105.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/699/105/GCF_000699105.1_ASM69910v1;;;na 1
2696672 Apteryx mantelli Apterygidae Apterygiformes Chordata GCF_001039765.1 519 151207 0.3420639837601993 85.5 ["u11", "u12", "u6atac"] AptMant0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/039/765/GCF_001039765.1_AptMant0 GCF_001039765.1;PRJNA294519;SAMEA2560515;;representative genome;202946;2696672;Apteryx mantelli mantelli;;;latest;Contig;Major;Full;2015/06/21;AptMant0;MPI-EVA;GCA_001039765.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/039/765/GCF_001039765.1_AptMant0;;;na 1
345164 Falco cherrug Falconidae Falconiformes Chordata GCF_000337975.1 533 158099 0.3359977810277875 89.8 ["u11", "u12", "u6atac"] F_cherrug_v1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/337/975/GCF_000337975.1_F_cherrug_v1.0 GCF_000337975.1;PRJNA217049;SAMN02981426;AKMU00000000.1;representative genome;345164;345164;Falco cherrug;;;latest;Scaffold;Major;Full;2013/02/05;F_cherrug_v1.0;BGI;GCA_000337975.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/337/975/GCF_000337975.1_F_cherrug_v1.0;;;na 1
451745 Nematolebias whitei Rivulidae Cyprinodontiformes Chordata GCF_014905685.2 656 196528 0.3326841934436871 93.3 ["u11", "u12", "u6atac"] NemWhi1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/905/685/GCF_014905685.2_NemWhi1 GCF_014905685.2;PRJNA678356;SAMN12588121;JAAMPK000000000.1;representative genome;451745;451745;Nematolebias whitei;;Nwh7;latest;Chromosome;Major;Full;2021/03/24;NemWhi1;Michigan State University;GCA_014905685.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/905/685/GCF_014905685.2_NemWhi1;;;na 1
8954 Falco peregrinus Falconidae Falconiformes Chordata GCF_000337955.1 532 159726 0.3319647069101074 91.0 ["u11", "u12", "u6atac"] F_peregrinus_v1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/337/955/GCF_000337955.1_F_peregrinus_v1.0 GCF_000337955.1;PRJNA198010;SAMN02981425;AKMT00000000.1;representative genome;8954;8954;Falco peregrinus;;;latest;Scaffold;Major;Full;2013/02/05;F_peregrinus_v1.0;BGI;GCA_000337955.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/337/955/GCF_000337955.1_F_peregrinus_v1.0;;;na 1
3197 Marchantia polymorpha Marchantiaceae Marchantiales Streptophyta Mpolymorpha_v3_1 260 79935 0.3242097387617682 99.6 ["u11", "u12", "u6atac"] .   . 1
37003 Kryptolebias marmoratus Rivulidae Cyprinodontiformes Chordata GCF_001649575.2 717 225022 0.3176234500905913 98.4 ["u11", "u12", "u6atac"] ASM164957v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/649/575/GCF_001649575.2_ASM164957v2 GCF_001649575.2;PRJNA679609;SAMN04622665;LWHD00000000.2;representative genome;37003;37003;Kryptolebias marmoratus;;JLee-2015;latest;Chromosome;Major;Full;2020/11/16;ASM164957v2;Washington State University;GCA_001649575.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/649/575/GCF_001649575.2_ASM164957v2;;;na 1
32473 Xiphophorus couchianus Poeciliidae Cyprinodontiformes Chordata GCF_001444195.1 728 234637 0.3093068213200773 100.0 ["u11", "u12", "u6atac"] X_couchianus-1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/444/195/GCF_001444195.1_X_couchianus-1.0 GCF_001444195.1;PRJNA516883;SAMN03922721;LNCC00000000.2;representative genome;32473;32473;Xiphophorus couchianus;;;latest;Chromosome;Major;Full;2018/09/19;X_couchianus-1.0;McDonnell Genome Institute - Washington University School of Medicine;GCA_001444195.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/444/195/GCF_001444195.1_X_couchianus-1.0;;;na 1
117165 Grallaria varia Formicariidae Passeriformes Chordata GCA_013396735.1 318 109003 0.2908864719495797 86.3 ["u11", "u12", "u6atac"] ASM1339673v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/396/735/GCA_013396735.1_ASM1339673v1 GCA_013396735.1;PRJNA545868;SAMN12253766;VWZG00000000.1;representative genome;117165;117165;Grallaria varia;;B10K-DU-001-02;latest;Scaffold;Major;Full;2020/07/10;ASM1339673v1;B10K Consortium;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/396/735/GCA_013396735.1_ASM1339673v1;;;na 1
239386 Serilophus lunatus Eurylaimidae Passeriformes Chordata GCA_013399895.1 323 111749 0.288207580840888 83.9 ["u11", "u12", "u6atac"] ASM1339989v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/399/895/GCA_013399895.1_ASM1339989v1 GCA_013399895.1;PRJNA545868;SAMN12253830;VXBA00000000.1;representative genome;239386;239386;Serilophus lunatus;;B10K-DU-002-03;latest;Scaffold;Major;Full;2020/07/10;ASM1339989v1;B10K Consortium;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/399/895/GCA_013399895.1_ASM1339989v1;;;na 1
73327 Aegithalos caudatus Aegithalidae Passeriformes Chordata GCA_013389925.1 279 98085 0.2836403562278882 79.2 ["u11", "u12", "u6atac"] ASM1338992v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/389/925/GCA_013389925.1_ASM1338992v1 GCA_013389925.1;PRJNA545868;SAMN12253835;WEIU00000000.1;representative genome;73327;73327;Aegithalos caudatus;;B10K-DU-002-10;latest;Scaffold;Major;Full;2020/07/06;ASM1338992v1;B10K Consortium;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/389/925/GCA_013389925.1_ASM1338992v1;;;na 1
51953 Elaeis guineensis Arecaceae Arecales Streptophyta GCF_000442705.1 383 134723 0.2834811185291549 98.8 ["u11", "u12", "u6atac"] EG5 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/442/705/GCF_000442705.1_EG5 GCF_000442705.1;PRJNA268357;SAMN02981535;ASJS00000000.1;representative genome;51953;51953;Elaeis guineensis;;;latest;Chromosome;Major;Full;2013/08/13;EG5;Orion Genomics;GCA_000442705.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/442/705/GCF_000442705.1_EG5;;;na 1
252798 Spizaetus tyrannus Accipitridae Accipitriformes Chordata GCA_013399215.1 326 115046 0.2825642270221544 87.1 ["u11", "u12", "u6atac"] ASM1339921v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/399/215/GCA_013399215.1_ASM1339921v1 GCA_013399215.1;PRJNA545868;SAMN12253891;VXAF00000000.1;representative genome;252798;252798;Spizaetus tyrannus;;B10K-DU-007-42;latest;Scaffold;Major;Full;2020/07/10;ASM1339921v1;B10K Consortium;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/399/215/GCA_013399215.1_ASM1339921v1;;;na 1
312124 Scytalopus superciliaris Rhinocryptidae Passeriformes Chordata GCA_013400415.1 307 108986 0.2808963062593212 79.6 ["u11", "u12", "u6atac"] ASM1340041v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/400/415/GCA_013400415.1_ASM1340041v1 GCA_013400415.1;PRJNA545868;SAMN12253857;VXBX00000000.1;representative genome;312124;312124;Scytalopus superciliaris;;B10K-DU-002-46;latest;Scaffold;Major;Full;2020/07/10;ASM1340041v1;B10K Consortium;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/400/415/GCA_013400415.1_ASM1340041v1;;;na 1
3649 Carica papaya Caricaceae Brassicales Streptophyta GCF_000150535.2 243 86587 0.2798571922146723 83.5 ["u11", "u12", "u6atac"] Papaya1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/150/535/GCF_000150535.2_Papaya1.0 GCF_000150535.2;PRJNA264084;SAMN02953710;ABIM00000000.1;representative genome;3649;3649;Carica papaya;cultivar=SunUp;;latest;Scaffold;Minor;Full;2008/05/06;Papaya1.0;The Papaya Genome Sequencing Consortium;GCA_000150535.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/150/535/GCF_000150535.2_Papaya1.0;;;na 1
47695 Climacteris rufus Climacteridae Passeriformes Chordata GCA_013398175.1 298 106391 0.2793165181040219 86.7 ["u11", "u12", "u6atac"] ASM1339817v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/398/175/GCA_013398175.1_ASM1339817v1 GCA_013398175.1;PRJNA545868;SAMN12253953;VZRZ00000000.1;representative genome;47695;47695;Climacteris rufus;;B10K-DU-029-53;latest;Scaffold;Major;Full;2020/07/10;ASM1339817v1;B10K Consortium;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/398/175/GCA_013398175.1_ASM1339817v1;;;na 1
667144 Chloropsis hardwickii Irenidae Passeriformes Chordata GCA_013390065.1 283 101165 0.2789606497910259 79.2 ["u11", "u12", "u6atac"] ASM1339006v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/390/065/GCA_013390065.1_ASM1339006v1 GCA_013390065.1;PRJNA545868;SAMN12253970;WEIW00000000.1;representative genome;667144;667144;Chloropsis hardwickii;;B10K-IZ-033-78;latest;Scaffold;Major;Full;2020/07/06;ASM1339006v1;B10K Consortium;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/390/065/GCA_013390065.1_ASM1339006v1;;;na 1
265632 Sclerurus mexicanus Furnariidae Passeriformes Chordata GCA_013396755.1 312 111736 0.2784520919605883 83.1 ["u11", "u12", "u6atac"] ASM1339675v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/396/755/GCA_013396755.1_ASM1339675v1 GCA_013396755.1;PRJNA545868;SAMN12253767;VWZF00000000.1;representative genome;265632;265632;Sclerurus mexicanus;;B10K-DU-001-03;latest;Scaffold;Major;Full;2020/07/10;ASM1339675v1;B10K Consortium;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/396/755/GCA_013396755.1_ASM1339675v1;;;na 1
269412 Xiphorhynchus elegans Dendrocolaptidae Passeriformes Chordata GCA_013401175.1 254 91404 0.2771171092539658 74.5 ["u11", "u12", "u6atac"] ASM1340117v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/401/175/GCA_013401175.1_ASM1340117v1 GCA_013401175.1;PRJNA545868;SAMN12254008;VZUH00000000.1;representative genome;269412;269412;Xiphorhynchus elegans;;OUT-0059;latest;Scaffold;Major;Full;2020/07/10;ASM1340117v1;B10K Consortium;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/401/175/GCA_013401175.1_ASM1340117v1;;;na 1
73333 Certhia familiaris Certhiidae Passeriformes Chordata GCA_013398575.1 270 97291 0.2767499308125173 71.0 ["u11", "u12", "u6atac"] ASM1339857v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/398/575/GCA_013398575.1_ASM1339857v1 GCA_013398575.1;PRJNA545868;SAMN12253998;WBNC00000000.1;representative genome;73333;73333;Certhia familiaris;;OUT-0039;latest;Scaffold;Major;Full;2020/07/10;ASM1339857v1;B10K Consortium;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/398/575/GCA_013398575.1_ASM1339857v1;;;na 1
3871 Lupinus angustifolius Fabaceae Fabales Streptophyta GCF_001865875.1 474 172856 0.2734667974384123 100.0 ["u11", "u12", "u6atac"] LupAngTanjil_v1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/865/875/GCF_001865875.1_LupAngTanjil_v1.0 GCF_001865875.1;PRJNA356456;SAMN04215042;MLAU00000000.1;representative genome;3871;3871;Lupinus angustifolius;cultivar=Tanjil;;latest;Chromosome;Major;Full;2016/11/16;LupAngTanjil_v1.0;CSIRO;GCA_001865875.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/865/875/GCF_001865875.1_LupAngTanjil_v1.0;;;na 1
4615 Ananas comosus Bromeliaceae Poales Streptophyta GCF_001540865.1 318 116536 0.2721344583839663 97.6 ["u11", "u12", "u6atac"] ASM154086v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/540/865/GCF_001540865.1_ASM154086v1 GCF_001540865.1;PRJNA371634;SAMN04316497;LODP00000000.1;representative genome;4615;4615;Ananas comosus;cultivar=F153;;latest;Chromosome;Major;Full;2016/03/14;ASM154086v1;Fujian Agriculture and Forestry University;GCA_001540865.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/540/865/GCF_001540865.1_ASM154086v1;;;na 1
13333 Amborella trichopoda Amborellaceae Amborellales Streptophyta GCF_000471905.2 253 92821 0.2718267185250446 99.2 ["u11", "u12", "u6atac"] AMTR1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/471/905/GCF_000471905.2_AMTR1.0 GCF_000471905.2;PRJNA238126;SAMN02313977;AWHE00000000.1;representative genome;13333;13333;Amborella trichopoda;;;latest;Scaffold;Minor;Full;2013/09/30;AMTR1.0;Amborella Genome Sequencing Project;GCA_000471905.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/471/905/GCF_000471905.2_AMTR1.0;;;na 1
38723 Joinvillea ascendens Joinvilleaceae Poales Streptophyta Jascendens_v1_1 299 109834 0.2714899258169668 100.0 ["u11", "u12", "u6atac"] .   . 1
37042 Fregata magnificens Fregatidae Pelecaniformes Chordata GCA_013389945.1 238 87719 0.2705867639869482 72.5 ["u11", "u12", "u6atac"] ASM1338994v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/389/945/GCA_013389945.1_ASM1338994v1 GCA_013389945.1;PRJNA545868;SAMN12253859;WAAD00000000.1;representative genome;37042;37042;Fregata magnificens;;B10K-DU-002-48;latest;Scaffold;Major;Full;2020/07/06;ASM1338994v1;B10K Consortium;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/389/945/GCA_013389945.1_ASM1338994v1;;;na 1
78828 Phalaenopsis equestris Orchidaceae Asparagales Streptophyta GCF_001263595.1 261 96206 0.2705588439570008 94.9 ["u11", "u12", "u6atac"] ASM126359v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/263/595/GCF_001263595.1_ASM126359v1 GCF_001263595.1;PRJNA382149;SAMN02046388;APLD00000000.1;representative genome;78828;78828;Phalaenopsis equestris;;;latest;Scaffold;Major;Full;2015/08/07;ASM126359v1;BGI-SZ;GCA_001263595.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/263/595/GCF_001263595.1_ASM126359v1;;;na 1
108875 Herrania umbratica Malvaceae Malvales Streptophyta GCF_002168275.1 268 98789 0.270551298747186 96.1 ["u11", "u12", "u6atac"] ASM216827v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/168/275/GCF_002168275.1_ASM216827v2 GCF_002168275.1;PRJNA389730;SAMN06806157;NHTG00000000.1;representative genome;108875;108875;Herrania umbratica;cultivar=Fairchild;;latest;Scaffold;Major;Full;2017/06/05;ASM216827v2;Mars, Incorporated;GCA_002168275.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/168/275/GCF_002168275.1_ASM216827v2;;;na 1
4432 Nelumbo nucifera Nelumbonaceae Proteales Streptophyta GCF_000365185.1 334 123143 0.2704957198506604 99.2 ["u11", "u12", "u6atac"] Chinese Lotus 1.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/365/185/GCF_000365185.1_Chinese_Lotus_1.1 GCF_000365185.1;PRJNA264089;SAMN02054413;AQOG00000000.1;representative genome;4432;4432;Nelumbo nucifera;;;latest;Scaffold;Major;Full;2013/08/08;Chinese Lotus 1.1;University of Illinois at Urbana-Champaign;GCA_000365185.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/365/185/GCF_000365185.1_Chinese_Lotus_1.1;;;na 1
54971 Arenaria interpres Scolopacidae Charadriiformes Chordata GCA_013399435.1 275 101403 0.2704616534550247 82.7 ["u11", "u12", "u6atac"] ASM1339943v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/399/435/GCA_013399435.1_ASM1339943v1 GCA_013399435.1;PRJNA545868;SAMN12253884;VXAK00000000.1;representative genome;54971;54971;Arenaria interpres;;B10K-DU-005-73;latest;Scaffold;Major;Full;2020/07/10;ASM1339943v1;B10K Consortium;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/399/435/GCA_013399435.1_ASM1339943v1;;;na 1
176943 Baryphthengus martii Momotidae Coraciiformes Chordata GCA_013396935.1 272 100404 0.2701736262863046 78.4 ["u11", "u12", "u6atac"] ASM1339693v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/396/935/GCA_013396935.1_ASM1339693v1 GCA_013396935.1;PRJNA545868;SAMN12253779;VWZK00000000.1;representative genome;176943;176943;Baryphthengus martii;;B10K-DU-001-21;latest;Scaffold;Major;Full;2020/07/10;ASM1339693v1;B10K Consortium;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/396/935/GCA_013396935.1_ASM1339693v1;;;na 1
325343 Eurystomus gularis Coraciidae Coraciiformes Chordata GCA_013400335.1 282 104160 0.2700063192968346 80.8 ["u11", "u12", "u6atac"] ASM1340033v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/400/335/GCA_013400335.1_ASM1340033v1 GCA_013400335.1;PRJNA545868;SAMN12253862;VZZY00000000.1;representative genome;325343;325343;Eurystomus gularis;;B10K-DU-002-51;latest;Scaffold;Major;Full;2020/07/10;ASM1340033v1;B10K Consortium;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/400/335/GCA_013400335.1_ASM1340033v1;;;na 1
56067 Anhinga anhinga Anhingidae Pelecaniformes Chordata GCA_013396435.1 286 106087 0.2688652195575945 83.1 ["u11", "u12", "u6atac"] ASM1339643v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/396/435/GCA_013396435.1_ASM1339643v1 GCA_013396435.1;PRJNA545868;SAMN12253762;WBMU00000000.1;representative genome;56067;56067;Anhinga anhinga;;B10K-CU-031-38;latest;Scaffold;Major;Full;2020/07/10;ASM1339643v1;B10K Consortium;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/396/435/GCA_013396435.1_ASM1339643v1;;;na 1
3656 Cucumis melo Cucurbitaceae Cucurbitales Streptophyta GCF_000313045.1 273 101631 0.2678991992463495 98.8 ["u11", "u12", "u6atac"] ASM31304v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/313/045/GCF_000313045.1_ASM31304v1 GCF_000313045.1;PRJNA246165;SAMEA2272451;CAJI00000000.1;representative genome;3656;3656;Cucumis melo;cultivar=DHL92;;latest;Scaffold;Major;Full;2012/10/05;ASM31304v1;Genetica Molecular, Centre de Recerca en Agrigenomica (CRAG);GCA_000313045.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/313/045/GCF_000313045.1_ASM31304v1;;;na 1
54955 Telopea speciosissima Proteaceae Proteales Streptophyta GCF_018873765.1 369 137446 0.2677502448935167 98.8 ["u11", "u12", "u6atac"] Tspe_v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/873/765/GCF_018873765.1_Tspe_v1 GCF_018873765.1;PRJNA765358;SAMN18238110;JAGEPE000000000.1;representative genome;54955;54955;Telopea speciosissima;ecotype=Mountain lineage;NSW1024214;latest;Chromosome;Major;Full;2021/06/14;Tspe_v1;Genomics for Australian Plants;GCA_018873765.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/873/765/GCF_018873765.1_Tspe_v1;;;na 1
3827 Cicer arietinum Fabaceae Fabales Streptophyta GCF_000331145.1 334 124586 0.2673711175152097 100.0 ["u11", "u12", "u6atac"] ASM33114v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/331/145/GCF_000331145.1_ASM33114v1 GCF_000331145.1;PRJNA190909;SAMN02981489;ANPC00000000.1;representative genome;3827;3827;Cicer arietinum;cultivar=CDC Frontier;;latest;Chromosome;Major;Full;2013/01/16;ASM33114v1;BGI-Shenzhen;GCA_000331145.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/331/145/GCF_000331145.1_ASM33114v1;;;na 1
42345 Phoenix dactylifera Arecaceae Arecales Streptophyta GCF_009389715.1 403 150749 0.266619032497089 98.4 ["u11", "u12", "u6atac"] palm_55x_up_171113_PBpolish2nd_filt_p https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/389/715/GCF_009389715.1_palm_55x_up_171113_PBpolish2nd_filt_p GCF_009389715.1;PRJNA692501;SAMN05011615;NBZB00000000.1;representative genome;42345;42345;Phoenix dactylifera;cultivar=Barhee BC4;;latest;Chromosome;Major;Full;2019/11/04;palm_55x_up_171113_PBpolish2nd_filt_p;The University of Arizona;GCA_009389715.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/389/715/GCF_009389715.1_palm_55x_up_171113_PBpolish2nd_filt_p;;;na 1
3760 Prunus persica Rosaceae Rosales Streptophyta GCF_000346465.2 303 113528 0.2661840799079337 100.0 ["u11", "u12", "u6atac"] Prunus_persica_NCBIv2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/346/465/GCF_000346465.2_Prunus_persica_NCBIv2 GCF_000346465.2;PRJNA241430;SAMN02981429;AKXU00000000.2;representative genome;3760;3760;Prunus persica;cultivar=Lovell;;latest;Chromosome;Major;Full;2017/02/02;Prunus_persica_NCBIv2;PGF;GCA_000346465.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/346/465/GCF_000346465.2_Prunus_persica_NCBIv2;;;na 1
4533 Oryza brachyantha Poaceae Poales Streptophyta GCF_000231095.2 310 116531 0.2653178250785255 100.0 ["u11", "u12", "u6atac"] ObraRS2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/231/095/GCF_000231095.2_ObraRS2 GCF_000231095.2;PRJNA232125;SAMN02981362;AGAT00000000.2;representative genome;4533;4533;Oryza brachyantha;;;latest;Chromosome;Major;Full;2021/03/10;ObraRS2;The Institute of Genetics and Developmental Biology;GCA_000231095.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/231/095/GCF_000231095.2_ObraRS2;;;na 1
3775 Cephalotus follicularis Cephalotaceae Oxalidales Streptophyta GCA_001972305.1 244 91724 0.2653096729297147 98.0 ["u11", "u12", "u6atac"] Cfol_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/972/305/GCA_001972305.1_Cfol_1.0 GCA_001972305.1;PRJDB4484;SAMD00045316;BDDD00000000.1;representative genome;3775;3775;Cephalotus follicularis;;St1;latest;Scaffold;Major;Full;2017/01/11;Cfol_1.0;National Institute for Basic Biology;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/972/305/GCA_001972305.1_Cfol_1.0;;;na 1
906689 Dendrobium catenatum Orchidaceae Asparagales Streptophyta GCF_001605985.2 270 101798 0.2645295293333856 96.9 ["u11", "u12", "u6atac"] ASM160598v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/605/985/GCF_001605985.2_ASM160598v2 GCF_001605985.2;PRJNA453230;SAMN03083363;JSDN00000000.2;representative genome;906689;906689;Dendrobium catenatum;;;latest;Scaffold;Major;Full;2017/12/12;ASM160598v2;The National Orchid Conservation Center of China, and The Orchid Conservation and Research Center of Shenzhen;GCA_001605985.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/605/985/GCF_001605985.2_ASM160598v2;;;na 1
981085 Morus notabilis Moraceae Rosales Streptophyta GCF_000414095.1 281 106075 0.2642070028959344 99.2 ["u11", "u12", "u6atac"] ASM41409v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/414/095/GCF_000414095.1_ASM41409v2 GCF_000414095.1;PRJNA263939;SAMN02141246;ATGF00000000.1;representative genome;981085;981085;Morus notabilis;;;latest;Scaffold;Major;Full;2013/08/07;ASM41409v2;BGI;GCA_000414095.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/414/095/GCF_000414095.1_ASM41409v2;;;na 1
4182 Sesamum indicum Pedaliaceae Lamiales Streptophyta GCF_000512975.1 318 120050 0.2641898178917984 98.8 ["u11", "u12", "u6atac"] S_indicum_v1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/512/975/GCF_000512975.1_S_indicum_v1.0 GCF_000512975.1;PRJNA268358;SAMN02981519;APMJ00000000.1;representative genome;4182;4182;Sesamum indicum;cultivar=Zhongzhi No. 13;;latest;Chromosome;Major;Full;2014/01/06;S_indicum_v1.0;Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences;GCA_000512975.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/512/975/GCF_000512975.1_S_indicum_v1.0;;;na 1
3661 Cucurbita maxima Cucurbitaceae Cucurbitales Streptophyta GCF_002738345.1 384 145634 0.2629812762810065 99.6 ["u11", "u12", "u6atac"] Cmax_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/738/345/GCF_002738345.1_Cmax_1.0 GCF_002738345.1;PRJNA418295;SAMN06886671;NEWN00000000.1;representative genome;3661;3661;Cucurbita maxima;cultivar=Rimu;;latest;Scaffold;Major;Full;2017/10/31;Cmax_1.0;Cornell University;GCA_002738345.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/738/345/GCF_002738345.1_Cmax_1.0;;;na 1
3673 Momordica charantia Cucurbitaceae Cucurbitales Streptophyta GCF_001995035.1 264 100445 0.2621414173509815 97.6 ["u11", "u12", "u6atac"] ASM199503v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/995/035/GCF_001995035.1_ASM199503v1 GCF_001995035.1;PRJNA397875;SAMD00048603;BDCS00000000.1;representative genome;3673;3673;Momordica charantia;strain=OHB3-1;;latest;Scaffold;Major;Full;2016/12/26;ASM199503v1;Division of Gene Research, Research Center for Human and Environmental Science, Shinshu University;GCA_001995035.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/995/035/GCF_001995035.1_ASM199503v1;;;na 1
3988 Ricinus communis Euphorbiaceae Malpighiales Streptophyta GCF_000151685.1 263 100369 0.2613482788774942 97.3 ["u11", "u12", "u6atac"] JCVI_RCG_1.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/151/685/GCF_000151685.1_JCVI_RCG_1.1 GCF_000151685.1;PRJNA34677;SAMN02953659;AASG00000000.2;representative genome;3988;3988;Ricinus communis;cultivar=Hale;;latest;Scaffold;Major;Full;2011/07/07;JCVI_RCG_1.1;J. Craig Venter Institute;GCA_000151685.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/151/685/GCF_000151685.1_JCVI_RCG_1.1;;;na 1
3662 Cucurbita moschata Cucurbitaceae Cucurbitales Streptophyta GCF_002738365.1 382 146075 0.2608274100930648 99.6 ["u11", "u12", "u6atac"] Cmos_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/738/365/GCF_002738365.1_Cmos_1.0 GCF_002738365.1;PRJNA418582;SAMN06886672;NEWM00000000.1;representative genome;3662;3662;Cucurbita moschata;cultivar=Rifu;;latest;Scaffold;Major;Full;2017/10/31;Cmos_1.0;Cornell University;GCA_002738365.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/738/365/GCF_002738365.1_Cmos_1.0;;;na 1
128215 Sphagnum magellanicum Sphagnaceae Sphagnales Streptophyta Smagellanicum_v1_1 334 127979 0.2603009827531115 99.6 ["u11", "u12", "u6atac"] .   . 1
744485 Urochloa fusca Poaceae Poales Streptophyta Ufusca_v1_1 324 124504 0.2595571506392796 96.9 ["u11", "u12", "u6atac"] .   . 1
3316 Thuja plicata Cupressaceae Cupressales Streptophyta Tplicata_v3_1 315 121219 0.2591867296394424 95.3 ["u11", "u12", "u6atac"] .   . 1
180498 Jatropha curcas Euphorbiaceae Malpighiales Streptophyta GCF_014843425.1 255 98296 0.2587492770240789 93.3 ["u11", "u12", "u6atac"] RJC1_Hi-C https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/843/425/GCF_014843425.1_RJC1_Hi-C GCF_014843425.1;PRJNA673911;SAMN15963826;JACVEQ000000000.1;representative genome;180498;180498;Jatropha curcas;;ELGS0001-1231;latest;Scaffold;Major;Full;2020/10/05;RJC1_Hi-C;Reliance Industries Ltd.;GCA_014843425.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/843/425/GCF_014843425.1_RJC1_Hi-C;;;na 1
3663 Cucurbita pepo Cucurbitaceae Cucurbitales Streptophyta GCF_002806865.1 385 149056 0.2576267557096111 99.2 ["u11", "u12", "u6atac"] ASM280686v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/806/865/GCF_002806865.1_ASM280686v2 GCF_002806865.1;PRJNA421955;SAMN07125871;NHTM00000000.1;representative genome;3664;3663;Cucurbita pepo subsp. pepo;cultivar=mu-cu-16;;latest;Chromosome;Major;Full;2017/12/07;ASM280686v2;Comav-UPV;GCA_002806865.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/806/865/GCF_002806865.1_ASM280686v2;;;na 1
389490 Cleome violacea Cleomaceae Brassicales Streptophyta Cviolacea_585 266 103017 0.2575448040819883 99.6 ["u11", "u12", "u6atac"] .   . 1
206008 Panicum hallii Poaceae Poales Streptophyta GCF_002211085.1 328 127039 0.2575235343534824 100.0 ["u11", "u12", "u6atac"] PHallii_v3.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/211/085/GCF_002211085.1_PHallii_v3.1 GCF_002211085.1;PRJNA482138;SAMN03003198;NCQW00000000.2;representative genome;206008;206008;Panicum hallii;strain=FIL2;;latest;Chromosome;Major;Full;2018/05/01;PHallii_v3.1;DOE Joint Genome Institute;GCA_002211085.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/211/085/GCF_002211085.1_PHallii_v3.1;;;na 1
53036 Sphagnum fallax Sphagnaceae Sphagnales Streptophyta Sfallax_522 329 127835 0.2567023501139165 100.0 ["u11", "u12", "u6atac"] .   . 1
2711 Citrus sinensis Rutaceae Sapindales Streptophyta GCF_000317415.1 301 117442 0.2556415243369032 99.6 ["u11", "u12", "u6atac"] Csi_valencia_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/317/415/GCF_000317415.1_Csi_valencia_1.0 GCF_000317415.1;PRJNA225998;SAMN02981414;AJPS00000000.1;representative genome;2711;2711;Citrus sinensis;cultivar=Valencia;;latest;Chromosome;Major;Full;2012/12/12;Csi_valencia_1.0;China sweet orange genome project;GCA_000317415.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/317/415/GCF_000317415.1_Csi_valencia_1.0;;;na 1
3659 Cucumis sativus Cucurbitaceae Cucurbitales Streptophyta GCF_000004075.3 270 105531 0.2551960756514588 99.6 ["u11", "u12", "u6atac"] Cucumber_9930_V3 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/004/075/GCF_000004075.3_Cucumber_9930_V3 GCF_000004075.3;PRJNA182750;SAMN02953750;ACHR00000000.3;representative genome;3659;3659;Cucumis sativus;cultivar=9930;;latest;Chromosome;Major;Full;2019/11/15;Cucumber_9930_V3;The Cucumber Genome Initiative;GCA_000004075.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/004/075/GCF_000004075.3_Cucumber_9930_V3;;;na 1
22663 Punica granatum Lythraceae Myrtales Streptophyta GCF_007655135.1 306 119802 0.2547707063642721 100.0 ["u11", "u12", "u6atac"] ASM765513v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/655/135/GCF_007655135.1_ASM765513v2 GCF_007655135.1;PRJNA580467;SAMN05193489;MABG00000000.2;representative genome;22663;22663;Punica granatum;;Tunisia-2019;latest;Chromosome;Major;Full;2019/10/22;ASM765513v2;Chinese Academy of Agricultural Sciences;GCA_007655135.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/655/135/GCF_007655135.1_ASM765513v2;;;na 1
4265 Cynara cardunculus Asteraceae Asterales Streptophyta GCF_001531365.1 326 127724 0.2545880515423662 99.6 ["u11", "u12", "u6atac"] CcrdV1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/531/365/GCF_001531365.1_CcrdV1 GCF_001531365.1;PRJNA453787;SAMN03402638;LEKV00000000.1;representative genome;59895;4265;Cynara cardunculus var. scolymus;;2C;latest;Chromosome;Major;Full;2018/04/17;CcrdV1;Compositae Genome Project;GCA_001531365.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/531/365/GCF_001531365.1_CcrdV1;;;na 1
15368 Brachypodium distachyon Poaceae Poales Streptophyta GCF_000005505.3 318 124610 0.254546618852459 99.6 ["u11", "u12", "u6atac"] Brachypodium_distachyon_v3.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/505/GCF_000005505.3_Brachypodium_distachyon_v3.0 GCF_000005505.3;PRJNA74771;SAMN02981254;ADDN00000000.3;representative genome;15368;15368;Brachypodium distachyon;strain=Bd21;;latest;Chromosome;Major;Full;2018/01/24;Brachypodium_distachyon_v3.0;JGI-PGF;GCA_000005505.4;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/505/GCF_000005505.3_Brachypodium_distachyon_v3.0;;;na 1
4555 Setaria italica Poaceae Poales Streptophyta GCF_000263155.2 331 129893 0.2541774173731416 99.6 ["u11", "u12", "u6atac"] Setaria_italica_v2.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/263/155/GCF_000263155.2_Setaria_italica_v2.0 GCF_000263155.2;PRJNA207554;SAMN02981383;AGNK00000000.2;representative genome;4555;4555;Setaria italica;strain=Yugu1;;latest;Chromosome;Major;Full;2015/10/30;Setaria_italica_v2.0;JGI-PGF;GCA_000263155.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/263/155/GCF_000263155.2_Setaria_italica_v2.0;;;na 1
28532 Tarenaya hassleriana Cleomaceae Brassicales Streptophyta GCF_000463585.1 356 139708 0.2541695225039981 100.0 ["u11", "u12", "u6atac"] ASM46358v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/463/585/GCF_000463585.1_ASM46358v1 GCF_000463585.1;PRJNA268022;SAMN02981509;AOUI00000000.1;representative genome;28532;28532;Tarenaya hassleriana;;;latest;Scaffold;Major;Full;2013/09/05;ASM46358v1;Beijing Genomics Institution-shenzhen;GCA_000463585.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/463/585/GCF_000463585.1_ASM46358v1;;;na 1
57918 Fragaria vesca Rosaceae Rosales Streptophyta GCF_000184155.1 294 115634 0.2536056862880408 98.4 ["u11", "u12", "u6atac"] FraVesHawaii_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/184/155/GCF_000184155.1_FraVesHawaii_1.0 GCF_000184155.1;PRJNA66853;SAMN00120060;AEMH00000000.1;representative genome;101020;57918;Fragaria vesca subsp. vesca;;;latest;Chromosome;Major;Full;2011/02/24;FraVesHawaii_1.0;Virginia Bioinformatics Institute;GCA_000184155.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/184/155/GCF_000184155.1_FraVesHawaii_1.0;;;na 1
29780 Mangifera indica Anacardiaceae Sapindales Streptophyta GCF_011075055.1 430 169528 0.2530036832629238 100.0 ["u11", "u12", "u6atac"] CATAS_Mindica_2.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/075/055/GCF_011075055.1_CATAS_Mindica_2.1 GCF_011075055.1;PRJNA771370;SAMN09899728;JAAHBS000000000.1;representative genome;29780;29780;Mangifera indica;cultivar=Alphonso;;latest;Chromosome;Major;Full;2020/03/10;CATAS_Mindica_2.1;Beijing Institute of Genomics, Chinese Academy of Sciences;GCA_011075055.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/075/055/GCF_011075055.1_CATAS_Mindica_2.1;;;na 1
4686 Asparagus officinalis Asparagaceae Asparagales Streptophyta GCF_001876935.1 345 136037 0.2529659339208986 96.9 ["u11", "u12", "u6atac"] Aspof.V1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/876/935/GCF_001876935.1_Aspof.V1 GCF_001876935.1;PRJNA376608;SAMN04606231;MPDI00000000.1;representative genome;4686;4686;Asparagus officinalis;;;latest;Chromosome;Major;Full;2017/02/06;Aspof.V1;University of Georgia;GCA_001876935.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/876/935/GCF_001876935.1_Aspof.V1;;;na 1
3750 Malus domestica Rosaceae Rosales Streptophyta GCF_002114115.1 478 188571 0.2528445006321113 99.6 ["u11", "u12", "u6atac"] ASM211411v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/114/115/GCF_002114115.1_ASM211411v1 GCF_002114115.1;PRJNA534520;SAMN05603590;MJAX00000000.1;representative genome;3750;3750;Malus domestica;cultivar=Golden Delicious;X9273 #13;latest;Chromosome;Major;Full;2017/05/03;ASM211411v1;IRHS;GCA_002114115.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/114/115/GCF_002114115.1_ASM211411v1;;;na 1
225117 Pyrus x bretschneideri Rosaceae Rosales Streptophyta GCF_000315295.1 467 184252 0.2528164401063236 95.3 ["u11", "u12", "u6atac"] Pbr_v1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/315/295/GCF_000315295.1_Pbr_v1.0 GCF_000315295.1;PRJNA259338;SAMN01797448;AJSU00000000.1;representative genome;225117;225117;Pyrus x bretschneideri;cultivar=Dangshansuli;;latest;Scaffold;Major;Full;2012/12/03;Pbr_v1.0;Nanjing Agricultural University;GCA_000315295.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/315/295/GCF_000315295.1_Pbr_v1.0;;;na 1
4530 Oryza sativa Poaceae Poales Streptophyta GCF_001433935.1 339 134379 0.2516367523270832 99.6 ["u11", "u12", "u6atac"] IRGSP-1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/433/935/GCF_001433935.1_IRGSP-1.0 GCF_001433935.1;PRJNA122;SAMD00000397;;representative genome;39947;4530;Oryza sativa Japonica Group;;;latest;Chromosome;Major;Full;2015/10/10;IRGSP-1.0;National Institute of Agrobiological Sciences;GCA_001433935.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/433/935/GCF_001433935.1_IRGSP-1.0;;;na 1
4556 Setaria viridis Poaceae Poales Streptophyta GCF_005286985.1 335 133026 0.2511978764406385 100.0 ["u11", "u12", "u6atac"] Setaria_viridis_v2.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/286/985/GCF_005286985.1_Setaria_viridis_v2.0 GCF_005286985.1;PRJNA633601;SAMN05660902;SNSE00000000.1;representative genome;4556;4556;Setaria viridis;cultivar=A10;;latest;Chromosome;Major;Full;2019/05/14;Setaria_viridis_v2.0;DOE Joint Genome Institute;GCA_005286985.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/286/985/GCF_005286985.1_Setaria_viridis_v2.0;;;na 1
52141 Brachypodium mexicanum Poaceae Poales Streptophyta Bmexicanum_v1_1 585 232505 0.2509760178471835 100.0 ["u11", "u12", "u6atac"] .   . 1
106335 Hibiscus syriacus Malvaceae Malvales Streptophyta GCF_006381635.1 1119 444779 0.2509542541119269 99.2 ["u11", "u12", "u6atac"] ASM638163v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/381/635/GCF_006381635.1_ASM638163v2 GCF_006381635.1;PRJNA691360;SAMN11494363;VEPZ00000000.2;representative genome;106335;106335;Hibiscus syriacus;cultivar=Baekdansim;YM2019G1;latest;Scaffold;Major;Full;2019/11/18;ASM638163v2;Korea Research Institute of Bioscience and Biotechnology;GCA_006381635.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/381/635/GCF_006381635.1_ASM638163v2;;;na 1
3641 Theobroma cacao Malvaceae Malvales Streptophyta GCF_000208745.1 276 110026 0.2502221174593389 99.6 ["u11", "u12", "u6atac"] Criollo_cocoa_genome_V2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/208/745/GCF_000208745.1_Criollo_cocoa_genome_V2 GCF_000208745.1;PRJNA341501;SAMEA4028428;FLSQ00000000.1;representative genome;3641;3641;Theobroma cacao;cultivar=B97-61/B2;;latest;Chromosome;Major;Full;2016/07/09;Criollo_cocoa_genome_V2;CIRAD;GCA_000208745.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/208/745/GCF_000208745.1_Criollo_cocoa_genome_V2;;;na 1
49495 Ceratopteris richardii Pteridaceae Polypodiales Streptophyta Crichardii_v2_1 307 122523 0.2499389399983717 97.6 ["u11", "u12", "u6atac"] .   . 1
161934 Beta vulgaris Chenopodiaceae Caryophyllales Streptophyta GCF_000511025.2 268 107039 0.2497507152375893 99.6 ["u11", "u12", "u6atac"] RefBeet-1.2.2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/511/025/GCF_000511025.2_RefBeet-1.2.2 GCF_000511025.2;PRJNA268352;SAMN02182557;AYZS00000000.2;representative genome;3555;161934;Beta vulgaris subsp. vulgaris;;;latest;Chromosome;Major;Full;2015/07/07;RefBeet-1.2.2;Beta vulgaris resource;GCA_000511025.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/511/025/GCF_000511025.2_RefBeet-1.2.2;;;na 1
458696 Tripterygium wilfordii Celastraceae Celastrales Streptophyta GCF_013401445.1 403 160977 0.249721155037799 100.0 ["u11", "u12", "u6atac"] ASM1340144v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/401/445/GCF_013401445.1_ASM1340144v1 GCF_013401445.1;PRJNA689611;SAMN11634134;JAAARO000000000.1;representative genome;458696;458696;Tripterygium wilfordii;;XIE 37;latest;Chromosome;Major;Full;2020/07/13;ASM1340144v1;Capital medical University;GCA_013401445.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/401/445/GCF_013401445.1_ASM1340144v1;;;na 1
4577 Zea mays Poaceae Poales Streptophyta GCF_902167145.1 426 170185 0.2496908171219909 99.2 ["u11", "u12", "u6atac"] Zm-B73-REFERENCE-NAM-5.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/167/145/GCF_902167145.1_Zm-B73-REFERENCE-NAM-5.0 GCF_902167145.1;PRJNA655717;SAMEA5569141;CABHLF000000000.1;representative genome;4577;4577;Zea mays;cultivar=B73;;latest;Chromosome;Major;Full;2020/03/21;Zm-B73-REFERENCE-NAM-5.0;MaizeGDB;GCA_902167145.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/167/145/GCF_902167145.1_Zm-B73-REFERENCE-NAM-5.0;;;na 1
29655 Zostera marina Zosteraceae Alismatales Streptophyta GCA_001185155.1 220 87900 0.2496595551520653 96.5 ["u11", "u12", "u6atac"] Zosma_marina.v.2.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/185/155/GCA_001185155.1_Zosma_marina.v.2.1 GCA_001185155.1;PRJNA41721;SAMN00991190;LFYR00000000.1;representative genome;29655;29655;Zostera marina;strain=Finnish;;latest;Scaffold;Major;Full;2015/07/22;Zosma_marina.v.2.1;JGI-PGF;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/185/155/GCA_001185155.1_Zosma_marina.v.2.1;;;na 1
75702 Populus euphratica Salicaceae Malpighiales Streptophyta GCF_000495115.1 408 163240 0.2493156042236996 99.6 ["u11", "u12", "u6atac"] PopEup_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/495/115/GCF_000495115.1_PopEup_1.0 GCF_000495115.1;PRJNA268063;SAMN02981499;AOFL00000000.1;representative genome;75702;75702;Populus euphratica;;;latest;Scaffold;Major;Full;2014/08/12;PopEup_1.0;Lanzhou University;GCA_000495115.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/495/115/GCF_000495115.1_PopEup_1.0;;;na 1
4081 Solanum lycopersicum Solanaceae Solanales Streptophyta GCF_000188115.4 315 126053 0.2492719675867308 99.2 ["u11", "u12", "u6atac"] SL3.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/188/115/GCF_000188115.4_SL3.0 GCF_000188115.4;PRJNA66163;SAMN02981290;AEKE00000000.3;representative genome;4081;4081;Solanum lycopersicum;cultivar=Heinz 1706;;latest;Chromosome;Major;Full;2018/04/18;SL3.0;Solanaceae Genomics Project;GCA_000188115.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/188/115/GCF_000188115.4_SL3.0;;;na 1
60698 Macadamia integrifolia Proteaceae Proteales Streptophyta GCF_013358625.1 354 142299 0.2481546129418939 96.5 ["u11", "u12", "u6atac"] SCU_Mint_v3 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/358/625/GCF_013358625.1_SCU_Mint_v3 GCF_013358625.1;PRJNA748012;SAMN13508564;JAAEEG000000000.1;representative genome;60698;60698;Macadamia integrifolia;cultivar=HAES 741;;latest;Chromosome;Major;Full;2020/06/23;SCU_Mint_v3;Southern Cross University;GCA_013358625.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/358/625/GCF_013358625.1_SCU_Mint_v3;;;na 1
3694 Populus trichocarpa Salicaceae Malpighiales Streptophyta GCF_000002775.4 402 161954 0.2476040306486979 99.6 ["u11", "u12", "u6atac"] Pop_tri_v3 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/775/GCF_000002775.4_Pop_tri_v3 GCF_000002775.4;PRJNA17973;SAMN02953657;AARH00000000.3;representative genome;3694;3694;Populus trichocarpa;;Nisqually-1;latest;Chromosome;Major;Full;2018/01/24;Pop_tri_v3;US DOE Joint Genome Institute (JGI;GCA_000002775.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/775/GCF_000002775.4_Pop_tri_v3;;;na 1
55571 Dioscorea alata Dioscoreaceae Dioscoreales Streptophyta Dalata_550 281 113465 0.2470416542120162 98.4 ["u11", "u12", "u6atac"] .   . 1
3847 Glycine max Fabaceae Fabales Streptophyta GCF_000004515.6 595 240692 0.2465943047076718 100.0 ["u11", "u12", "u6atac"] Glycine_max_v4.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/004/515/GCF_000004515.6_Glycine_max_v4.0 GCF_000004515.6;PRJNA48389;SAMN00002965;ACUP00000000.4;representative genome;3847;3847;Glycine max;cultivar=Williams 82;;latest;Chromosome;Major;Full;2021/03/10;Glycine_max_v4.0;US DOE Joint Genome Institute (JGI-PGF);GCA_000004515.5;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/004/515/GCF_000004515.6_Glycine_max_v4.0;;;na 1
3821 Cajanus cajan Fabaceae Fabales Streptophyta GCF_000340665.1 335 135722 0.2462203341246683 98.0 ["u11", "u12", "u6atac"] C.cajan_V1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/340/665/GCF_000340665.1_C.cajan_V1.0 GCF_000340665.1;PRJNA376605;SAMN02981370;AGCT00000000.1;representative genome;3821;3821;Cajanus cajan;;;latest;Chromosome;Major;Full;2016/09/29;C.cajan_V1.0;BGI;GCA_000340665.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/340/665/GCF_000340665.1_C.cajan_V1.0;;;na 1
96939 Vitis riparia Vitaceae Vitales Streptophyta GCF_004353265.1 318 129091 0.2457325224675254 99.6 ["u11", "u12", "u6atac"] EGFV_Vit.rip_1.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/353/265/GCF_004353265.1_EGFV_Vit.rip_1.0 GCF_004353265.1;PRJNA636344;SAMN10662253;SJAQ00000000.1;representative genome;96939;96939;Vitis riparia;cultivar=Riparia Gloire de Montpellier;1030;latest;Chromosome;Major;Full;2019/04/16;EGFV_Vit.rip_1.0;Bordeaux University;GCA_004353265.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/353/265/GCF_004353265.1_EGFV_Vit.rip_1.0;;;na 1
3848 Glycine soja Fabaceae Fabales Streptophyta GCF_004193775.1 603 245165 0.2453533413625858 100.0 ["u11", "u12", "u6atac"] ASM419377v2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/193/775/GCF_004193775.1_ASM419377v2 GCF_004193775.1;PRJNA525136;SAMN09862384;QZWG00000000.1;representative genome;3848;3848;Glycine soja;cultivar=W05;;latest;Chromosome;Major;Full;2019/02/21;ASM419377v2;The Chinese University of Hong Kong;GCA_004193775.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/193/775/GCF_004193775.1_ASM419377v2;;;na 1
3816 Abrus precatorius Fabaceae Fabales Streptophyta GCF_003935025.1 302 122794 0.2453369727692207 98.4 ["u11", "u12", "u6atac"] Abrus_2018 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/935/025/GCF_003935025.1_Abrus_2018 GCF_003935025.1;PRJNA510631;SAMN10039699;QYUI00000000.1;representative genome;3816;3816;Abrus precatorius;;BTA;latest;Scaffold;Major;Full;2018/12/11;Abrus_2018;Los Alamos National Laboratory;GCA_003935025.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/935/025/GCF_003935025.1_Abrus_2018;;;na 1
102211 Benincasa hispida Cucurbitaceae Cucurbitales Streptophyta GCF_009727055.1 260 105972 0.2447473454326379 99.2 ["u11", "u12", "u6atac"] ASM972705v1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/727/055/GCF_009727055.1_ASM972705v1 GCF_009727055.1;PRJNA691418;SAMN08364809;WEIL00000000.1;representative genome;102211;102211;Benincasa hispida;cultivar=B227;;latest;Chromosome;Major;Full;2019/12/03;ASM972705v1;Chinese Academy of Agricultural Sciences;GCA_009727055.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/727/055/GCF_009727055.1_ASM972705v1;;;na 1
4558 Sorghum bicolor Poaceae Poales Streptophyta GCF_000003195.3 320 130618 0.2443904748812415 100.0 ["u11", "u12", "u6atac"] Sorghum_bicolor_NCBIv3 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/195/GCF_000003195.3_Sorghum_bicolor_NCBIv3 GCF_000003195.3;PRJNA38691;SAMN02953738;ABXC00000000.3;representative genome;4558;4558;Sorghum bicolor;cultivar=BTx623;;latest;Chromosome;Major;Full;2017/04/07;Sorghum_bicolor_NCBIv3;Sorghum Consortium;GCA_000003195.3;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/195/GCF_000003195.3_Sorghum_bicolor_NCBIv3;;;na 1
4097 Nicotiana tabacum Solanaceae Solanales Streptophyta GCF_000715135.1 657 268362 0.2442206684286239 98.8 ["u11", "u12", "u6atac"] Ntab-TN90 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/715/135/GCF_000715135.1_Ntab-TN90 GCF_000715135.1;PRJNA319578;SAMN02316627;AYMY00000000.1;representative genome;4097;4097;Nicotiana tabacum;cultivar=TN90;;latest;Scaffold;Major;Full;2014/05/29;Ntab-TN90;Philip Morris International R&D;GCA_000715135.1;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/715/135/GCF_000715135.1_Ntab-TN90;;;na 1
3983 Manihot esculenta Euphorbiaceae Malpighiales Streptophyta GCF_001659605.2 354 145193 0.2432204030313232 100.0 ["u11", "u12", "u6atac"] M.esculenta_v8 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/659/605/GCF_001659605.2_M.esculenta_v8 GCF_001659605.2;PRJNA394209;SAMN04116956;LTYI00000000.2;representative genome;3983;3983;Manihot esculenta;cultivar=AM560-2;;latest;Chromosome;Major;Full;2021/08/13;M.esculenta_v8;DOE-Joint Genome Institute;GCA_001659605.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/659/605/GCF_001659605.2_M.esculenta_v8;;;na 1
326968 Ziziphus jujuba Rhamnaceae Rosales Streptophyta GCF_000826755.1 340 139477 0.2431750073310112 95.3 ["u11", "u12", "u6atac"] ZizJuj_1.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/826/755/GCF_000826755.1_ZizJuj_1.1 GCF_000826755.1;PRJNA315994;SAMN02918186;JREP00000000.1;representative genome;326968;326968;Ziziphus jujuba;cultivar=Dongzao;;latest;Chromosome;Major;Full;2015/02/06;ZizJuj_1.1;Agricultural University of Hebei;GCA_000826755.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/826/755/GCF_000826755.1_ZizJuj_1.1;;;na 1
62337 Miscanthus sinensis Poaceae Poales Streptophyta Msinensis_v7_1 593 243555 0.2428854629159362 97.3 ["u11", "u12", "u6atac"] .   . 1
51240 Juglans regia Juglandaceae Fagales Streptophyta GCF_001411555.2 366 150529 0.2425527684813943 100.0 ["u11", "u12", "u6atac"] Walnut 2.0 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/411/555/GCF_001411555.2_Walnut_2.0 GCF_001411555.2;PRJNA350852;SAMN03704235;LIHL00000000.2;representative genome;51240;51240;Juglans regia;cultivar=Chandler;;latest;Chromosome;Major;Full;2020/07/08;Walnut 2.0;Johns Hopkins University;GCA_001411555.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/411/555/GCF_001411555.2_Walnut_2.0;;;na 1
3483 Cannabis sativa Cannabaceae Rosales Streptophyta GCF_900626175.2 286 117743 0.2423133297748858 97.3 ["u11", "u12", "u6atac"] cs10 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/626/175/GCF_900626175.2_cs10 GCF_900626175.2;PRJNA560384;SAMEA5040675;UZAU00000000.1;representative genome;3483;3483;Cannabis sativa;;;latest;Chromosome;Minor;Full;2019/02/14;cs10;HARVARD OEB;GCA_900626175.2;different;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/626/175/GCF_900626175.2_cs10;;;na 1
158149 Paspalum vaginatum Poaceae Poales Streptophyta Pvaginatum_v3_1 319 131416 0.2421528067711694 99.6 ["u11", "u12", "u6atac"] .   . 1

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CREATE TABLE "genomes" (
"taxonomy_id" INTEGER,
  "species" TEXT,
  "family" TEXT,
  "order" TEXT,
  "phylum" TEXT,
  "accession" TEXT,
  "n_minor_introns" INTEGER,
  "n_major_introns" INTEGER,
  "percent_minor_introns" REAL,
  "busco_score" REAL,
  "minor_snRNAs" TEXT,
  "genome_version" TEXT,
  "source_url" TEXT,
  "source_metadata" TEXT,
  "minor_intron+" INTEGER
  ,PRIMARY KEY ([taxonomy_id])
);
CREATE INDEX [idx_genomes_phylum]
    ON [genomes] ([phylum]);
CREATE INDEX [idx_genomes_order]
    ON [genomes] ([order]);
CREATE INDEX [idx_genomes_family]
    ON [genomes] ([family]);