genomes
Data license: ODbL · Data source: Larue & Roy, 2023
- taxonomy_id
- INTEGER (primary key), unique identifier for each species
- species
- TEXT, binomial name of the species
- family
- TEXT, taxonomic family of the species
- order
- TEXT, taxonomic order of the species
- phylum
- TEXT, taxonomic phylum of the species
- accession
- TEXT, accession number of the genome assembly
- n_minor_introns
- INTEGER, total number of minor introns in the genome
- n_major_introns
- INTEGER, total number of major introns in the genome
- percent_minor_introns
- REAL, percentage of minor introns in the genome
- busco_score
- REAL, BUSCO score assessing the genome assembly completeness (vs. eukaryota_odb10)
- minor_snRNAs
- TEXT, minor snRNAs found in the annotated transcriptome
- genome_version
- TEXT, version of the genome assembly
- source_url
- TEXT, URL for the source genome/annotation files
- source_metadata
- TEXT, additional metadata from the original data source
- minor_intron+
- INTEGER, indicates if the species is inferred to contain real minor introns (1) or not (0)
47 rows where phylum = "Mucoromycota" sorted by percent_minor_introns descending
This data as json, CSV (advanced)
Suggested facets: family, order, minor_snRNAs, minor_snRNAs (array)
| taxonomy_id | species | family | order | phylum | accession | n_minor_introns | n_major_introns | percent_minor_introns ▲ | busco_score | minor_snRNAs | genome_version | source_url | source_metadata | minor_intron+ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 658196 | Glomus cerebriforme | Glomeraceae | Glomerales | Mucoromycota | GCA_003550305.1 | 179 | 64868 | 0.2751856350023829 | 94.5 | ["u11", "u12", "u4atac", "u6atac"] | ASM355030v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/550/305/GCA_003550305.1_ASM355030v1 | GCA_003550305.1;PRJNA430010;SAMN08364855;QKYT00000000.1;representative genome;658196;658196;Glomus cerebriforme;strain=DAOM 227022;;latest;Scaffold;Major;Full;2018/09/12;ASM355030v1;INRA;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/550/305/GCA_003550305.1_ASM355030v1;;;na | 1 |
| 588596 | Rhizophagus irregularis | Glomeraceae | Glomerales | Mucoromycota | GCF_000439145.1 | 205 | 75172 | 0.2719662496517505 | 94.5 | ["u11", "u12", "u4atac", "u6atac"] | ASM43914v3 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/439/145/GCF_000439145.1_ASM43914v3 | GCF_000439145.1;PRJNA471752;SAMN02744054;AUPC00000000.2;representative genome;747089;588596;Rhizophagus irregularis DAOM 181602=DAOM 197198;strain=DAOM 197198;;latest;Scaffold;Major;Full;2018/01/30;ASM43914v3;DOE Joint Genome Institute;GCA_000439145.3;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/439/145/GCF_000439145.1_ASM43914v3;;;na | 1 |
| 4874 | Gigaspora margarita | Gigasporaceae | Diversisporales | Mucoromycota | GCA_009809945.1 | 223 | 81923 | 0.2714678742726365 | 95.3 | ["u11", "u12", "u4atac", "u6atac"] | UNITO_GmarBEG34_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/809/945/GCA_009809945.1_UNITO_GmarBEG34_1.0 | GCA_009809945.1;PRJNA575165;SAMN12878420;WTPW00000000.1;representative genome;4874;4874;Gigaspora margarita;strain=BEG34;;latest;Scaffold;Major;Full;2019/12/30;UNITO_GmarBEG34_1.0;CNR;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/809/945/GCA_009809945.1_UNITO_GmarBEG34_1.0;;;na | 1 |
| 1803374 | Rhizophagus sp. mucl 43196 | Glomeraceae | Glomerales | Mucoromycota | GCA_003549995.1 | 174 | 69113 | 0.2511293604860941 | 94.1 | ["u11", "u12", "u4atac", "u6atac"] | ASM354999v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/549/995/GCA_003549995.1_ASM354999v1 | GCA_003549995.1;PRJNA430014;SAMN08364867;QKKE00000000.1;representative genome;1803374;1803374;Rhizophagus sp. MUCL 43196;strain=MUCL 43196;;latest;Scaffold;Major;Full;2018/08/30;ASM354999v1;INRA;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/549/995/GCA_003549995.1_ASM354999v1;;;na | 1 |
| 44941 | Gigaspora rosea | Gigasporaceae | Diversisporales | Mucoromycota | GCA_003550325.1 | 190 | 90294 | 0.2099818752486627 | 92.9 | ["u11", "u12", "u4atac"] | ASM355032v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/550/325/GCA_003550325.1_ASM355032v1 | GCA_003550325.1;PRJNA430513;SAMN08375202;QKWP00000000.1;representative genome;44941;44941;Gigaspora rosea;strain=DAOM 194757;;latest;Scaffold;Major;Full;2018/09/12;ASM355032v1;INRA;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/550/325/GCA_003550325.1_ASM355032v1;;;na | 1 |
| 94130 | Rhizophagus clarus | Glomeraceae | Glomerales | Mucoromycota | GCA_015698045.1 | 211 | 102834 | 0.204764908535106 | 89.8 | ["u11", "u12", "u4atac", "u6atac"] | RCL21 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/698/045/GCA_015698045.1_RCL21 | GCA_015698045.1;PRJDB8680;SAMD00190756;BLAL00000000.1;representative genome;94130;94130;Rhizophagus clarus;strain=HR1;;latest;Contig;Major;Full;2020/11/13;RCL21;NIBB core research facilities, National Institues for Basic Biology;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/698/045/GCA_015698045.1_RCL21;;;na | 1 |
| 94023 | Acaulospora morrowiae | Acaulosporaceae | Diversisporales | Mucoromycota | GCA_910591835.1 | 105 | 56351 | 0.1859855462661187 | 73.3 | ["u11", "u12", "u4atac", "u6atac"] | Acaulospora_morrowiae_CL551 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/591/835/GCA_910591835.1_Acaulospora_morrowiae_CL551 | GCA_910591835.1;PRJEB45340;SAMEA8911292;CAJVPV000000000.1;representative genome;94023;94023;Acaulospora morrowiae;strain=CL551;C-19-7;latest;Contig;Major;Full;2021/11/12;Acaulospora_morrowiae_CL551;UPPSALA UNIVERISTY;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/591/835/GCA_910591835.1_Acaulospora_morrowiae_CL551;;;na | 1 |
| 27381 | Funneliformis mosseae | Glomeraceae | Glomerales | Mucoromycota | GCA_910592005.1 | 99 | 54332 | 0.1818816483254028 | 82.7 | ["u11", "u12", "u4atac", "u6atac"] | Funneliformis_mosseae_87-6_pot_B_2015 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/592/005/GCA_910592005.1_Funneliformis_mosseae_87-6_pot_B_2015 | GCA_910592005.1;PRJEB45340;SAMEA8911288;CAJVPP000000000.1;representative genome;27381;27381;Funneliformis mosseae;strain=87-6 pot B 2015;87;latest;Contig;Major;Full;2021/11/11;Funneliformis_mosseae_87-6_pot_B_2015;UPPSALA UNIVERISTY;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/592/005/GCA_910592005.1_Funneliformis_mosseae_87-6_pot_B_2015;;;na | 1 |
| 1117310 | Funneliformis caledonium | Glomeraceae | Glomerales | Mucoromycota | GCA_910591825.1 | 101 | 56481 | 0.1785019971015517 | 82.0 | ["u11", "u12", "u4atac", "u6atac"] | Funneliformis_caledonium_UK204 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/591/825/GCA_910591825.1_Funneliformis_caledonium_UK204 | GCA_910591825.1;PRJEB45340;SAMEA8911289;CAJVPQ000000000.1;representative genome;1117310;1117310;Funneliformis caledonium;strain=UK204;Rothamsted, U.K. on 8/14/90;latest;Contig;Major;Full;2021/11/12;Funneliformis_caledonium_UK204;UPPSALA UNIVERISTY;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/591/825/GCA_910591825.1_Funneliformis_caledonium_UK204;;;na | 1 |
| 1433469 | Cetraspora pellucida | Gigasporaceae | Diversisporales | Mucoromycota | GCA_910591915.1 | 95 | 62395 | 0.1520243238918227 | 74.5 | ["u11", "u12", "u4atac", "u6atac"] | Cetraspora_pellucida__FL966 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/591/915/GCA_910591915.1_Cetraspora_pellucida_FL966 | GCA_910591915.1;PRJEB45340;SAMEA8911298;CAJVQA000000000.1;representative genome;1433469;1433469;Cetraspora pellucida;strain=FL966;FL966;latest;Contig;Major;Full;2021/11/12;Cetraspora_pellucida__FL966;UPPSALA UNIVERISTY;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/591/915/GCA_910591915.1_Cetraspora_pellucida_FL966;;;na | 1 |
| 144539 | Paraglomus occultum | Paraglomeraceae | Paraglomerales | Mucoromycota | GCA_910592205.1 | 57 | 39318 | 0.1447619047619047 | 75.7 | ["u11", "u12", "u4atac", "u6atac"] | Paraglomus_occultum_IA702 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/592/205/GCA_910592205.1_Paraglomus_occultum_IA702 | GCA_910592205.1;PRJEB45340;SAMEA8911305;CAJVPJ000000000.1;representative genome;144539;144539;Paraglomus occultum;strain=IA702;Collected from same site as holotype in 1979;latest;Contig;Major;Full;2021/11/11;Paraglomus_occultum_IA702;UPPSALA UNIVERISTY;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/592/205/GCA_910592205.1_Paraglomus_occultum_IA702;;;na | 1 |
| 1213867 | Diversispora eburnea | Diversisporaceae | Diversisporales | Mucoromycota | GCA_910592015.1 | 73 | 50675 | 0.1438480334200362 | 82.4 | ["u11", "u12", "u4atac", "u6atac"] | Diversispora_eburnea_AZ414A | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/592/015/GCA_910592015.1_Diversispora_eburnea_AZ414A | GCA_910592015.1;PRJEB45340;SAMEA8911293;CAJVPK000000000.1;representative genome;1213867;1213867;Diversispora eburnea;strain=AZ414A;LT3 and UT2;latest;Contig;Major;Full;2021/11/11;Diversispora_eburnea_AZ414A;UPPSALA UNIVERISTY;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/592/015/GCA_910592015.1_Diversispora_eburnea_AZ414A;;;na | 1 |
| 144538 | Paraglomus brasilianum | Paraglomeraceae | Paraglomerales | Mucoromycota | GCA_910592345.1 | 61 | 43679 | 0.1394604481024234 | 88.2 | ["u11", "u12", "u4atac", "u6atac"] | Paraglomus_brasilianum_BR232B | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/592/345/GCA_910592345.1_Paraglomus_brasilianum_BR232B | GCA_910592345.1;PRJEB45340;SAMEA8911306;CAJVPI000000000.1;representative genome;144538;144538;Paraglomus brasilianum;ecotype=caatinga, /strain=BR232B;;latest;Contig;Major;Full;2021/11/11;Paraglomus_brasilianum_BR232B;UPPSALA UNIVERISTY;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/592/345/GCA_910592345.1_Paraglomus_brasilianum_BR232B;;;na | 1 |
| 144679 | Ambispora leptoticha | Ambisporaceae | Archaeosporales | Mucoromycota | GCA_910591765.1 | 67 | 49950 | 0.133954455485135 | 83.5 | ["u11", "u12", "u4atac", "u6atac"] | Ambispora_leptoticha_FL130A | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/591/765/GCA_910591765.1_Ambispora_leptoticha_FL130A | GCA_910591765.1;PRJEB45340;SAMEA8911307;CAJVPS000000000.1;representative genome;144679;144679;Ambispora leptoticha;strain=FL130A;From FL130;latest;Contig;Major;Full;2021/11/12;Ambispora_leptoticha_FL130A;UPPSALA UNIVERISTY;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/591/765/GCA_910591765.1_Ambispora_leptoticha_FL130A;;;na | 1 |
| 50956 | Geosiphon pyriformis | Geosiphonaceae | Archaeosporales | Mucoromycota | GCA_016748015.1 | 105 | 79197 | 0.1324052356813195 | 92.2 | ["u11", "u12", "u4atac", "u6atac"] | ASM1674801v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/748/015/GCA_016748015.1_ASM1674801v1 | GCA_016748015.1;PRJNA610605;SAMN14307302;JAAOMT000000000.1;representative genome;50956;50956;Geosiphon pyriformis;strain=uo1;;latest;Scaffold;Major;Full;2021/01/25;ASM1674801v1;University of Ottawa;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/748/015/GCA_016748015.1_ASM1674801v1;;;na | 1 |
| 1348616 | Dentiscutata erythropus | Gigasporaceae | Diversisporales | Mucoromycota | GCA_910591965.1 | 94 | 72091 | 0.1302209600332479 | 76.5 | ["u11", "u12", "u4atac", "u6atac"] | Dentiscutata_erythropus_MA453B | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/591/965/GCA_910591965.1_Dentiscutata_erythropus_MA453B | GCA_910591965.1;PRJEB45340;SAMEA8911297;CAJVPY000000000.1;representative genome;1348616;1348616;Dentiscutata erythropus;strain=MA453B;RI453B;latest;Contig;Major;Full;2021/11/12;Dentiscutata_erythropus_MA453B;UPPSALA UNIVERISTY;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/591/965/GCA_910591965.1_Dentiscutata_erythropus_MA453B;;;na | 1 |
| 1348612 | Diversispora epigaea | Diversisporaceae | Diversisporales | Mucoromycota | GCA_003547095.1 | 119 | 93689 | 0.1268548524646085 | 93.7 | ["u11", "u12", "u4atac", "u6atac"] | Glomus_Soap2_v3.1.nr.fa | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/547/095/GCA_003547095.1_Glomus_Soap2_v3.1.nr.fa | GCA_003547095.1;PRJNA431769;SAMN08400201;PQFF00000000.1;representative genome;1348612;1348612;Diversispora epigaea;strain=IT104;;latest;Scaffold;Major;Full;2018/09/12;Glomus_Soap2_v3.1.nr.fa;Cornell University;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/547/095/GCA_003547095.1_Glomus_Soap2_v3.1.nr.fa;;;na | 1 |
| 2340872 | Endogone sp. flas-f59071 | Endogonaceae | Endogonales | Mucoromycota | GCA_003990785.1 | 43 | 34757 | 0.1235632183908045 | 63.1 | ["u12", "u4atac", "u6atac"] | Endsp1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/990/785/GCA_003990785.1_Endsp1 | GCA_003990785.1;PRJNA331665;SAMN05444560;RBNK00000000.1;representative genome;2340872;2340872;Endogone sp. FLAS-F59071;strain=FLAS-F59071;;latest;Contig;Major;Full;2019/01/02;Endsp1;DOE Joint Genome Institute;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/990/785/GCA_003990785.1_Endsp1;;;na | 1 |
| 144530 | Ambispora gerdemannii | Ambisporaceae | Archaeosporales | Mucoromycota | GCA_910591945.1 | 57 | 50175 | 0.1134734830387004 | 89.0 | ["u11", "u12", "u4atac", "u6atac"] | Ambispora_gerdemannii_MT106 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/591/945/GCA_910591945.1_Ambispora_gerdemannii_MT106 | GCA_910591945.1;PRJEB45340;SAMEA8911308;CAJVPL000000000.1;representative genome;144530;144530;Ambispora gerdemannii;ecotype=Cultured in leek, /strain=MT106;#2;latest;Contig;Major;Full;2021/11/11;Ambispora_gerdemannii_MT106;UPPSALA UNIVERISTY;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/591/945/GCA_910591945.1_Ambispora_gerdemannii_MT106;;;na | 1 |
| 984092 | Claroideoglomus candidum | Claroideoglomeraceae | Glomerales | Mucoromycota | GCA_910592215.1 | 69 | 61442 | 0.1121750581196859 | 79.2 | ["u11", "u12", "u4atac", "u6atac"] | Claroideoglomus_candidum_CCK_pot_B_6-9 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/592/215/GCA_910592215.1_Claroideoglomus_candidum_CCK_pot_B_6-9 | GCA_910592215.1;PRJEB45340;SAMEA8911304;CAJVPN000000000.1;representative genome;984092;984092;Claroideoglomus candidum;strain=(CCK) pot B 6-9;NC268;latest;Contig;Major;Full;2021/11/11;Claroideoglomus_candidum_CCK_pot_B_6-9;UPPSALA UNIVERISTY;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/592/215/GCA_910592215.1_Claroideoglomus_candidum_CCK_pot_B_6-9;;assembly from type material;na | 1 |
| 160502 | Racocetra persica | Gigasporaceae | Diversisporales | Mucoromycota | GCA_910592285.1 | 66 | 60193 | 0.1095272075540583 | 36.5 | ["u11", "u12", "u6atac"] | Racocetra_persica_MA461A | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/592/285/GCA_910592285.1_Racocetra_persica_MA461A | GCA_910592285.1;PRJEB45340;SAMEA8911300;CAJVQC000000000.1;representative genome;160502;160502;Racocetra persica;strain=MA461A;#7250;latest;Contig;Major;Full;2021/12/06;Racocetra_persica_MA461A;UPPSALA UNIVERISTY;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/592/285/GCA_910592285.1_Racocetra_persica_MA461A;;;na | 1 |
| 994334 | Jimgerdemannia flammicorona | Endogonaceae | Endogonales | Mucoromycota | GCA_003990745.1 | 35 | 40283 | 0.0868098616002778 | 60.8 | ["u11", "u12", "u6atac"] | Jimfl_GMNB39_1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/990/745/GCA_003990745.1_Jimfl_GMNB39_1 | GCA_003990745.1;PRJNA331664;SAMN05444478;RBNI00000000.1;representative genome;994334;994334;Jimgerdemannia flammicorona;strain=GMNB39;;latest;Contig;Major;Full;2018/12/31;Jimfl_GMNB39_1;DOE Joint Genome Institute;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/990/745/GCA_003990745.1_Jimfl_GMNB39_1;;;na | 1 |
| 27376 | Acaulospora colombiana | Acaulosporaceae | Diversisporales | Mucoromycota | GCA_910592055.1 | 34 | 39846 | 0.0852557673019057 | 41.2 | ["u11", "u12", "u4atac", "u6atac"] | Acaulospora_colombiana_CL356 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/592/055/GCA_910592055.1_Acaulospora_colombiana_CL356 | GCA_910592055.1;PRJEB45340;SAMEA8911291;CAJVPT000000000.1;representative genome;27376;27376;Acaulospora colombiana;strain=CL356;CIAT culture C-10;latest;Contig;Major;Full;2021/11/12;Acaulospora_colombiana_CL356;UPPSALA UNIVERISTY;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/592/055/GCA_910592055.1_Acaulospora_colombiana_CL356;;;na | 1 |
| 1896174 | Umbelopsis sp. pmi_123 | Umbelopsidaceae | Umbelopsidales | Mucoromycota | GCA_021235465.1 | 31 | 38089 | 0.0813221406086044 | 96.9 | ["u11", "u12", "u6atac"] | Umbelo1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/235/465/GCA_021235465.1_Umbelo1 | GCA_021235465.1;PRJNA340475;SAMN05720797;JAJSME000000000.1;representative genome;1896174;1896174;Umbelopsis sp. PMI_123;strain=PMI_123;;latest;Contig;Major;Full;2021/12/20;Umbelo1;DOE Joint Genome Institute;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/235/465/GCA_021235465.1_Umbelo1;;;na | 1 |
| 90262 | Absidia repens | Cunninghamellaceae | Mucorales | Mucoromycota | GCA_002105175.1 | 37 | 55111 | 0.0670921882933198 | 97.6 | ["u11", "u12", "u4atac", "u6atac"] | Absrep1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/105/175/GCA_002105175.1_Absrep1 | GCA_002105175.1;PRJNA330702;SAMN05421884;MCGE00000000.1;representative genome;90262;90262;Absidia repens;strain=NRRL 1336;;latest;Contig;Major;Full;2017/04/20;Absrep1;DOE Joint Genome Institute;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/105/175/GCA_002105175.1_Absrep1;;;na | 1 |
| 60492 | Racocetra fulgida | Gigasporaceae | Diversisporales | Mucoromycota | GCA_910592135.1 | 15 | 32613 | 0.0459727841118058 | 17.3 | ["u11", "u6atac"] | Racocetra_fulgida_IN212 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/592/135/GCA_910592135.1_Racocetra_fulgida_IN212 | GCA_910592135.1;PRJEB45340;SAMEA8911301;CAJVPZ000000000.1;representative genome;60492;60492;Racocetra fulgida;strain=IN212;IU-57-3 Pot A Chicken Ranch;latest;Contig;Major;Full;2021/11/12;Racocetra_fulgida_IN212;UPPSALA UNIVERISTY;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/592/135/GCA_910592135.1_Racocetra_fulgida_IN212;;;na | 1 |
| 101127 | Hesseltinella vesiculosa | Cunninghamellaceae | Mucorales | Mucoromycota | GCA_002104935.1 | 17 | 39511 | 0.0430074883626796 | 94.9 | ["u11", "u4atac", "u6atac"] | Hesve2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/104/935/GCA_002104935.1_Hesve2 | GCA_002104935.1;PRJNA243954;SAMN02745228;MCGT00000000.1;representative genome;101127;101127;Hesseltinella vesiculosa;strain=NRRL 3301;;latest;Contig;Major;Full;2017/04/20;Hesve2;DOE Joint Genome Institute;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/104/935/GCA_002104935.1_Hesve2;;;na | 1 |
| 29924 | Mucor lusitanicus | Mucoraceae | Mucorales | Mucoromycota | GCA_010203745.1 | 15 | 35383 | 0.0423752754392903 | 96.1 | ["u11", "u12", "u4atac", "u6atac"] | Muccir1_3 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/010/203/745/GCA_010203745.1_Muccir1_3 | GCA_010203745.1;PRJNA537675;SAMN11512151;JAAECE000000000.1;representative genome;29924;29924;Mucor lusitanicus;strain=MU402;;latest;Contig;Major;Full;2020/02/05;Muccir1_3;DOE Joint Genome Institute;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/010/203/745/GCA_010203745.1_Muccir1_3;;;na | 1 |
| 4837 | Phycomyces blakesleeanus | Phycomycetaceae | Mucorales | Mucoromycota | GCF_001638985.1 | 23 | 57806 | 0.0397724325165574 | 91.8 | ["u11", "u12", "u6atac"] | Phybl2 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/638/985/GCF_001638985.1_Phybl2 | GCF_001638985.1;PRJNA342701;SAMN00189023;AMYC00000000.1;representative genome;763407;4837;Phycomyces blakesleeanus NRRL 1555(-);strain=NRRL 1555(-);;latest;Scaffold;Major;Full;2016/05/06;Phybl2;JGI-PSF;GCA_001638985.2;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/638/985/GCF_001638985.1_Phybl2;;;na | 1 |
| 58291 | Rhizopus microsporus | Rhizopodaceae | Mucorales | Mucoromycota | GCF_002708625.1 | 13 | 32683 | 0.0397602153168583 | 96.9 | ["u11", "u12", "u6atac"] | Rhimi1_1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/708/625/GCF_002708625.1_Rhimi1_1 | GCF_002708625.1;PRJNA430271;SAMN02745869;JOSV00000000.1;representative genome;1340429;58291;Rhizopus microsporus ATCC 52813;strain=ATCC 52813;;latest;Scaffold;Major;Full;2017/10/23;Rhimi1_1;DOE Joint Genome Institute;GCA_002708625.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/708/625/GCF_002708625.1_Rhimi1_1;;;na | 1 |
| 13706 | Syncephalastrum racemosum | Syncephalastraceae | Mucorales | Mucoromycota | GCA_002105135.1 | 11 | 38912 | 0.0282609254168486 | 97.3 | ["u11", "u4atac", "u6atac"] | Synrac1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/105/135/GCA_002105135.1_Synrac1 | GCA_002105135.1;PRJNA330704;SAMN05421883;MCGN00000000.1;representative genome;13706;13706;Syncephalastrum racemosum;strain=NRRL 2496;;latest;Contig;Major;Full;2017/04/20;Synrac1;DOE Joint Genome Institute;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/105/135/GCA_002105135.1_Synrac1;;;na | 1 |
| 44442 | Umbelopsis vinacea | Umbelopsidaceae | Umbelopsidales | Mucoromycota | GCA_016758895.1 | 10 | 35757 | 0.0279587329102245 | 95.7 | ["u11", "u12", "u4atac", "u6atac"] | ASM1675889v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/758/895/GCA_016758895.1_ASM1675889v1 | GCA_016758895.1;PRJNA668042;SAMN16393840;JAEPRA000000000.1;representative genome;44442;44442;Umbelopsis vinacea;strain=WA0000051536;;latest;Scaffold;Major;Full;2021/01/27;ASM1675889v1;University of Warsaw;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/758/895/GCA_016758895.1_ASM1675889v1;;;na | 1 |
| 2184031 | Apophysomyces sp. bc1021 | Mucoraceae | Mucorales | Mucoromycota | GCA_016097735.1 | 6 | 40256 | 0.014902389349759 | 90.2 | ["u11", "u12", "u6atac"] | ASM1609773v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/097/735/GCA_016097735.1_ASM1609773v1 | GCA_016097735.1;PRJNA463336;SAMN09083213;JAAZWV000000000.1;representative genome;2184031;2184031;Apophysomyces sp. BC1021;strain=BC1021;;latest;Scaffold;Major;Full;2020/12/16;ASM1609773v1;DOE Joint Genome Institute;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/097/735/GCA_016097735.1_ASM1609773v1;;;na | 1 |
| 64648 | Mucor saturninus | Mucoraceae | Mucorales | Mucoromycota | GCA_016758985.1 | 6 | 40538 | 0.0147987371744277 | 97.3 | ["u11", "u12", "u4atac", "u6atac"] | ASM1675898v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/758/985/GCA_016758985.1_ASM1675898v1 | GCA_016758985.1;PRJNA668042;SAMN16393843;JAEPRD000000000.1;representative genome;64648;64648;Mucor saturninus;strain=WA0000017839;;latest;Scaffold;Major;Full;2021/01/27;ASM1675898v1;University of Warsaw;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/758/985/GCA_016758985.1_ASM1675898v1;;;na | 1 |
| 679940 | Apophysomyces ossiformis | Mucoraceae | Mucorales | Mucoromycota | GCA_014839865.1 | 5 | 39154 | 0.0127684568043106 | 89.0 | ["u11", "u12", "u4atac", "u6atac"] | ASM1483986v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/839/865/GCA_014839865.1_ASM1483986v1 | GCA_014839865.1;PRJNA499679;SAMN10361476;JABAYA000000000.1;representative genome;679940;679940;Apophysomyces ossiformis;strain=NRRL A-21654;;latest;Scaffold;Major;Full;2020/10/02;ASM1483986v1;DOE Joint Genome Institute;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/839/865/GCA_014839865.1_ASM1483986v1;;;na | 1 |
| 91625 | Umbelopsis isabellina | Umbelopsidaceae | Umbelopsidales | Mucoromycota | GCA_016758905.1 | 4 | 32689 | 0.0122350350227877 | 96.1 | ["u11", "u12", "u4atac", "u6atac"] | ASM1675890v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/758/905/GCA_016758905.1_ASM1675890v1 | GCA_016758905.1;PRJNA668042;SAMN16393839;JAEPQZ000000000.1;representative genome;91625;91625;Umbelopsis isabellina;strain=WA0000067209;;latest;Scaffold;Major;Full;2021/01/27;ASM1675890v1;University of Warsaw;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/758/905/GCA_016758905.1_ASM1675890v1;;;na | 1 |
| 2184030 | Apophysomyces sp. bc1015 | Mucoraceae | Mucorales | Mucoromycota | GCA_016097715.1 | 5 | 40953 | 0.012207627325553 | 90.2 | ["u11", "u12", "u6atac"] | ASM1609771v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/097/715/GCA_016097715.1_ASM1609771v1 | GCA_016097715.1;PRJNA463337;SAMN09083227;JAAZWU000000000.1;representative genome;2184030;2184030;Apophysomyces sp. BC1015;strain=BC1015;;latest;Scaffold;Major;Full;2020/12/16;ASM1609771v1;DOE Joint Genome Institute;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/097/715/GCA_016097715.1_ASM1609771v1;;;na | 1 |
| 604196 | Linnemannia exigua | Mortierellaceae | Mortierellales | Mucoromycota | GCA_016097895.1 | 4 | 32839 | 0.0121791553755747 | 92.2 | ["u4atac", "u6atac"] | UCR_MexiNRRL28262_1.0 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/097/895/GCA_016097895.1_UCR_MexiNRRL28262_1.0 | GCA_016097895.1;PRJNA340842;SAMN05720535;JAAAIL000000000.1;representative genome;604196;604196;Linnemannia exigua;strain=NRRL 28262;;latest;Scaffold;Major;Full;2020/12/16;UCR_MexiNRRL28262_1.0;DOE Joint Genome Institute;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/097/895/GCA_016097895.1_UCR_MexiNRRL28262_1.0;;;na | 1 |
| 101091 | Choanephora cucurbitarum | Choanephoraceae | Mucorales | Mucoromycota | GCA_001683725.1 | 4 | 35054 | 0.0114096639853956 | 95.7 | ["u11", "u12", "u6atac"] | ASM168372v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/683/725/GCA_001683725.1_ASM168372v1 | GCA_001683725.1;PRJNA314369;SAMN04532838;LUGH00000000.1;representative genome;101091;101091;Choanephora cucurbitarum;strain=KUS-F28377;;latest;Scaffold;Major;Full;2016/07/12;ASM168372v1;Korea University;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/683/725/GCA_001683725.1_ASM168372v1;;;na | 1 |
| 2054153 | Mucor circinatus | Mucoraceae | Mucorales | Mucoromycota | GCA_016758965.1 | 5 | 50679 | 0.009865046168416 | 94.5 | ["u11", "u12", "u4atac", "u6atac"] | ASM1675896v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/758/965/GCA_016758965.1_ASM1675896v1 | GCA_016758965.1;PRJNA668042;SAMN16393841;JAEPRB000000000.1;representative genome;2054153;2054153;Mucor circinatus;strain=CBS 142.35;;latest;Scaffold;Major;Full;2021/01/27;ASM1675896v1;University of Warsaw;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/758/965/GCA_016758965.1_ASM1675896v1;;;na | 1 |
| 64571 | Lobosporangium transversale | Mortierellaceae | Mortierellales | Mucoromycota | GCF_002105155.1 | 3 | 33137 | 0.0090525045262522 | 97.6 | ["u4atac", "u6atac"] | Lobtra1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/105/155/GCF_002105155.1_Lobtra1 | GCF_002105155.1;PRJNA396744;SAMN05421885;MCFF00000000.1;representative genome;64571;64571;Lobosporangium transversale;strain=NRRL 3116;;latest;Contig;Major;Full;2017/04/20;Lobtra1;DOE Joint Genome Institute;GCA_002105155.1;identical;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/105/155/GCF_002105155.1_Lobtra1;;assembly from type material;na | 1 |
| 1896186 | Mortierella sp. am989 | Mortierellaceae | Mortierellales | Mucoromycota | GCA_015502455.1 | 3 | 33147 | 0.0090497737556561 | 91.4 | ["u11", "u6atac"] | UCR_MspAM989 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/502/455/GCA_015502455.1_UCR_MspAM989 | GCA_015502455.1;PRJNA340567;SAMN05720439;JAAAUM000000000.1;representative genome;1896186;1896186;Mortierella sp. AM989;strain=AM989;;latest;Scaffold;Major;Full;2020/11/16;UCR_MspAM989;DOE Joint Genome Institute;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/502/455/GCA_015502455.1_UCR_MspAM989;;;na | 1 |
| 64524 | Linnemannia hyalina | Mortierellaceae | Mortierellales | Mucoromycota | GCA_019671135.1 | 3 | 36471 | 0.0082250370126665 | 94.9 | ["u4atac", "u6atac"] | ASM1967113v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/671/135/GCA_019671135.1_ASM1967113v1 | GCA_019671135.1;PRJNA730508;SAMN19232282;JAHRHY000000000.1;representative genome;64524;64524;Linnemannia hyalina;strain=SCG-10;;latest;Contig;Major;Full;2021/08/18;ASM1967113v1;University of Minnesota-Twin Cities;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/671/135/GCA_019671135.1_ASM1967113v1;;;na | 1 |
| 97098 | Mucor plumbeus | Mucoraceae | Mucorales | Mucoromycota | GCA_016758945.1 | 3 | 36650 | 0.008184868905683 | 95.3 | ["u11", "u12", "u4atac", "u6atac"] | ASM1675894v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/758/945/GCA_016758945.1_ASM1675894v1 | GCA_016758945.1;PRJNA668042;SAMN16393842;JAEPRC000000000.1;representative genome;97098;97098;Mucor plumbeus;strain=CBS 226.32;;latest;Scaffold;Major;Full;2021/01/27;ASM1675894v1;University of Warsaw;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/758/945/GCA_016758945.1_ASM1675894v1;;;na | 1 |
| 2184029 | Apophysomyces sp. bc1034 | Mucoraceae | Mucorales | Mucoromycota | GCA_016097755.1 | 3 | 40113 | 0.0074783128926114 | 89.4 | ["u11", "u12", "u6atac"] | ASM1609775v1 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/097/755/GCA_016097755.1_ASM1609775v1 | GCA_016097755.1;PRJNA463335;SAMN09083216;JAAZWW000000000.1;representative genome;2184029;2184029;Apophysomyces sp. BC1034;strain=BC1034;;latest;Scaffold;Major;Full;2020/12/16;ASM1609775v1;DOE Joint Genome Institute;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/097/755/GCA_016097755.1_ASM1609775v1;;;na | 1 |
| 936053 | Rhizopus delemar | Rhizopodaceae | Mucorales | Mucoromycota | GCA_000149305.1 | 3 | 40405 | 0.0074242724213027 | 74.9 | ["u11", "u12", "u4atac", "u6atac"] | RO3 | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/149/305/GCA_000149305.1_RO3 | GCA_000149305.1;PRJNA13066;SAMN02953598;AACW00000000.2;representative genome;246409;936053;Rhizopus delemar RA 99-880;strain=RA 99-880;;latest;Scaffold;Major;Full;2009/05/27;RO3;Broad Institute;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/149/305/GCA_000149305.1_RO3;;;na | 1 |
| 86630 | Rhizopus azygosporus | Rhizopodaceae | Mucorales | Mucoromycota | GCA_003325435.1 | 3 | 48803 | 0.006146785231324 | 94.1 | ["u11", "u6atac"] | Razy_CA | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/325/435/GCA_003325435.1_Razy_CA | GCA_003325435.1;PRJNA418064;SAMN08014123;PJQL00000000.1;representative genome;86630;86630;Rhizopus azygosporus;strain=CBS 357.93;;latest;Scaffold;Major;Full;2018/07/17;Razy_CA;University of California, Riverside;na;na;https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/325/435/GCA_003325435.1_Razy_CA;;assembly from type material;na | 1 |
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CREATE TABLE "genomes" (
"taxonomy_id" INTEGER,
"species" TEXT,
"family" TEXT,
"order" TEXT,
"phylum" TEXT,
"accession" TEXT,
"n_minor_introns" INTEGER,
"n_major_introns" INTEGER,
"percent_minor_introns" REAL,
"busco_score" REAL,
"minor_snRNAs" TEXT,
"genome_version" TEXT,
"source_url" TEXT,
"source_metadata" TEXT,
"minor_intron+" INTEGER
,PRIMARY KEY ([taxonomy_id])
);
CREATE INDEX [idx_genomes_phylum]
ON [genomes] ([phylum]);
CREATE INDEX [idx_genomes_order]
ON [genomes] ([order]);
CREATE INDEX [idx_genomes_family]
ON [genomes] ([family]);